PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G04370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 267aa    MW: 29332.2 Da    PI: 9.2511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G04370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-1170114554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v+ +k+L
  OGLUM05G04370.1  70 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 114
                      9*************************.....67*************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MAACQQQIWQ EGKQQQHLHH GGYDDLSSVY RGTVVLPRRQ GGLAPEPPPP PPSSSSGRSA  60
AAQATAMRIH SEAERRRRER INAHLATLRR ILPDAKQMDK ATLLASVVNQ VKHLKTRATE  120
ATTPSTAATI PPEANEVTVQ CYAGGEHTAA ARTYVRATVS CDDRPGLLAD IAATFRRLRL  180
RPLSADMSCL GGRTRHAFVL CREEEEEEDA AAEARPLKEA VRQALAKVAL PETVYGGGGR  240
SKRQRLMMES RYSTEVVHTH VDPLQYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-17bHLH family protein