PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM05G04280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 27428.8 Da PI: 10.2786 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.8e-14 | 27 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE+e+++da ++G + Wk+I + ++t+ q++s+ qk+ OGLUM05G04280.1 27 RERWSAEEHERFLDALLLFGRD-WKRIEGFVA-TKTAIQIRSHAQKH 71 78******************77.*********.************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MAAMAARAAA VGTMKKARKP YTITRPRERW SAEEHERFLD ALLLFGRDWK RIEGFVATKT 60 AIQIRSHAQK HFLKARKFGL AGGLPPPLHP RRAALLRANA AAAAADMMPP PWLPSAGTPS 120 CSGSGESWLA DAAFFSQDET ILLPISPGTG STSLLAFACF KSAAVNSRKF FRSNILSCVI 180 VHFFLISDPH LLAVSCSADD LGFAQVYKFI GDVFGSGEPR PVEAHLRRLQ GMDPAISETI 240 LLVLKNLEAN LSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 6e-28 | MYB_related family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM05G04280.1 |