PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G01950.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1651aa MW: 179114 Da PI: 6.9902

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G01950.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	798	840	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ OGLUM05G01950.1 798 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 840 899*************99.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1651 aa Download sequence
MPPPPPDRRD FLYRDGRRHD GDPLPPPAPT PPRWRDSPYH PPPPPPPLRD HSRPSPRRTP 60 SSASSGRPFA HKSSDLMLPP PPPPPWTSPP PLIRRNRSAI SDGYYRQGGG SYDRSYPDES 120 LGYTPSRSDR YWLDDDGGGG GYKGFSRYGG GGGGGSRRDG RDMRGSYRRS PFRGYGSDFS 180 RNQQEHPPPP LRRSPLRSVA VPMSYDPPGD RADRGDRDHH HRVTPWRPLR RRESRSDAAD 240 AAGAGPVPVG QAAAAAASEK DVSARSSAVA APQVSEEEAP RKKPRLGWGQ GLAKYEKQKV 300 QGPAESAEAV AEGSPTATEQ KGITHTPAPA PCVSPVAAPS PAPCASPVAA PSPAPPCKSP 360 VPEDKSCELT ANTVTESNKN IPGPDVQACN NEVPTKLDQL EGDPIDSLAK VLSELVQHED 420 SCSGDSKRLS NVSKLLLLKE SISKELEKTE LEIDSLEGEL KSVNVEARNR TLKDPPTAVT 480 YAQNPSPSPV KEQGELTPSP KISMEQDADV KGSELMEVET AQAHNAKAVS SEESVACPGV 540 APGQVPAAAD VIPSDPCGKT GSGIDVDIEQ REENPCQENF NAMKADGSSD LATRPCSYRD 600 VKYNLMDQII AANRSEAKKN SQLLCKPVPA DRSNLDLLAS SYLSSQMKND VIIKKKHAIL 660 KNRQRFKEQI LTFKFRVLRH LWKEDVRLLS VRKQRSKSHK RTDQSNRSSQ SGSQRQRSSN 720 RSRLAVPAGN LSTFPITEMS GVARKLFSEF QLKRCRNYLK MPALIVDEKE KAGAKFVSKN 780 GLVEDPVSVE KERALINPWI QEEKEIFMEK LATFGKDFSK ISSFLQHKTT ADCIEFYYKH 840 HKSDSFREVK KLLDLRQQQQ PASNYLGAVS GKKWNPEANA ASLDMLGVAT EVAAQGLEYV 900 NEVKKNSAKS ILRTVCGVDN STKGSEKDCV GDVSLHERES VAADVLAGIC GTLSPEGMGS 960 CITSSADPGQ KIGIISRMEH LLIPEADKNF DDDGTLSDQE CEVDIVDWND DEKSSFIEAM 1020 NRYGKDFARI SSYVKSKSFE QCKVFFSKAR KSLGLDLIHQ GAADAGFPTG DANGGRSGTD 1080 GACIAEMDSA ICSAQSCPKV EIDACPVSDG EIQGHNPLSD IASRQPEADK SNMPDVVDIN 1140 VEEGESKAEK DCSILVDHKQ LREDINQTSC ARIDINCPES TDKLQDIEDV TPVNMHGDDL 1200 MATSVEQVAA AHVESRSSLH SEGIGIDVSR IEGCSHESTI GKGGKSTPSV CLPAENGVSK 1260 ENIIHFSNMD GASSISPAFT SNYQQSKLAD PIQSKPKPLT PKDLMPVQFS SSLPDPTSIC 1320 FEGIAAITTP NFEDHGNRAS IASGAKDVNM FPTFKDQSSN RHDALFSNVD GYRQQRRNNH 1380 FGTEVCGLSE STGISQSDQF TVSKFQNGRP SSLGLLNGNL GVLSTGRREE AREGLFRPCS 1440 VKTSAGNEEQ QKRPGDVKLF GQILSHQSSL QSSGSSVHGS KSKPPSPKVD KPASSRLLSN 1500 PRERLVYSSR PPIIANLGLE ERAMRSFDHM DGRTIQPEPM VMVAKCQRPS AGVPVYSTKN 1560 GALSVFAEFQ QPSMPPHTSD HKLLENFADL HKRNGIELLS GFQQPGRLGG AGVLVSGVSD 1620 PVAALKAQYG SGSKMLSSSN DVDTWKDIGS R

Sequence ? help Back to Top

Protein Sequence Length: 1651 aa Download sequence

MPPPPPDRRD FLYRDGRRHD GDPLPPPAPT PPRWRDSPYH PPPPPPPLRD HSRPSPRRTP  60
SSASSGRPFA HKSSDLMLPP PPPPPWTSPP PLIRRNRSAI SDGYYRQGGG SYDRSYPDES  120
LGYTPSRSDR YWLDDDGGGG GYKGFSRYGG GGGGGSRRDG RDMRGSYRRS PFRGYGSDFS  180
RNQQEHPPPP LRRSPLRSVA VPMSYDPPGD RADRGDRDHH HRVTPWRPLR RRESRSDAAD  240
AAGAGPVPVG QAAAAAASEK DVSARSSAVA APQVSEEEAP RKKPRLGWGQ GLAKYEKQKV  300
QGPAESAEAV AEGSPTATEQ KGITHTPAPA PCVSPVAAPS PAPCASPVAA PSPAPPCKSP  360
VPEDKSCELT ANTVTESNKN IPGPDVQACN NEVPTKLDQL EGDPIDSLAK VLSELVQHED  420
SCSGDSKRLS NVSKLLLLKE SISKELEKTE LEIDSLEGEL KSVNVEARNR TLKDPPTAVT  480
YAQNPSPSPV KEQGELTPSP KISMEQDADV KGSELMEVET AQAHNAKAVS SEESVACPGV  540
APGQVPAAAD VIPSDPCGKT GSGIDVDIEQ REENPCQENF NAMKADGSSD LATRPCSYRD  600
VKYNLMDQII AANRSEAKKN SQLLCKPVPA DRSNLDLLAS SYLSSQMKND VIIKKKHAIL  660
KNRQRFKEQI LTFKFRVLRH LWKEDVRLLS VRKQRSKSHK RTDQSNRSSQ SGSQRQRSSN  720
RSRLAVPAGN LSTFPITEMS GVARKLFSEF QLKRCRNYLK MPALIVDEKE KAGAKFVSKN  780
GLVEDPVSVE KERALINPWI QEEKEIFMEK LATFGKDFSK ISSFLQHKTT ADCIEFYYKH  840
HKSDSFREVK KLLDLRQQQQ PASNYLGAVS GKKWNPEANA ASLDMLGVAT EVAAQGLEYV  900
NEVKKNSAKS ILRTVCGVDN STKGSEKDCV GDVSLHERES VAADVLAGIC GTLSPEGMGS  960
CITSSADPGQ KIGIISRMEH LLIPEADKNF DDDGTLSDQE CEVDIVDWND DEKSSFIEAM  1020
NRYGKDFARI SSYVKSKSFE QCKVFFSKAR KSLGLDLIHQ GAADAGFPTG DANGGRSGTD  1080
GACIAEMDSA ICSAQSCPKV EIDACPVSDG EIQGHNPLSD IASRQPEADK SNMPDVVDIN  1140
VEEGESKAEK DCSILVDHKQ LREDINQTSC ARIDINCPES TDKLQDIEDV TPVNMHGDDL  1200
MATSVEQVAA AHVESRSSLH SEGIGIDVSR IEGCSHESTI GKGGKSTPSV CLPAENGVSK  1260
ENIIHFSNMD GASSISPAFT SNYQQSKLAD PIQSKPKPLT PKDLMPVQFS SSLPDPTSIC  1320
FEGIAAITTP NFEDHGNRAS IASGAKDVNM FPTFKDQSSN RHDALFSNVD GYRQQRRNNH  1380
FGTEVCGLSE STGISQSDQF TVSKFQNGRP SSLGLLNGNL GVLSTGRREE AREGLFRPCS  1440
VKTSAGNEEQ QKRPGDVKLF GQILSHQSSL QSSGSSVHGS KSKPPSPKVD KPASSRLLSN  1500
PRERLVYSSR PPIIANLGLE ERAMRSFDHM DGRTIQPEPM VMVAKCQRPS AGVPVYSTKN  1560
GALSVFAEFQ QPSMPPHTSD HKLLENFADL HKRNGIELLS GFQQPGRLGG AGVLVSGVSD  1620
PVAALKAQYG SGSKMLSSSN DVDTWKDIGS R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	5e-75	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM05G01950.1