PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29490.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 282aa    MW: 29176.4 Da    PI: 6.1009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29490.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.6e-13109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  OGLUM04G29490.1 109 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 153
                      6*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MEKAFENALA TVGDDEEEGD GLWEKLAEAV EGKTADEVRR HYELLVEDVD GIEAGRVPLL  60
VYAGDGGVEE GSAGGGKKGG GGGGGGGGGG HGEKGSAKSA EQERRKGIAW TEDEHRLFLL  120
GLEKYGKGDW RSISRNFVIS RTPTQVASHA QKYFIRLNSM NRERRRSSIH DITSVNNGDT  180
SAAQGPITGQ PNGPSANPGK SSKQSPQPAN APPGVDAYGT TIGQPVGGPL VSAVGTPVTL  240
PVPAVPHIAY GMHAPVPGAV VPGAPVNMPP MPYPMPPPTS HG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17483GGGKKGGGGG
27584GGGKKGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-76MYB family protein