PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29470.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 377aa    MW: 41738.2 Da    PI: 9.0463
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29470.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-19243338395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++++
  OGLUM04G29470.1 243 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SESGK 334
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      +vv+
  OGLUM04G29470.1 335 FVVR 338
                      7775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPEFLGNRHL HGVDIAGAPP AKATSPATAG  60
GLLTNTAPAT VSQIHARCRR RQIYRCCGLL PRAPPPSDPC AFARAAITAA GSARGLLSHL  120
YGGLEVGGEM REEEKSGGWD GFQTNFRMDQ AFVPASSPFP PVSSSSHSFS SAKISNGPTY  180
TKKAKKSNVK DPPIVFRRSD MESEKNDDNP DQTPVSEPPS MNQNGENLII RFNCREYRVI  240
LRKELTNSDV GNIGRIVMPK RDAEAHLPAL HQREGVTLKM DDFKFETTWN FKYRFWPNNK  300
SRMYVLESTG GFVKHHGLQT GDIFIIYKSS ESGKFVVRGE KAIKPNAIMP VVDCSCKNEL  360
NKSEECGFTI SLQTKKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-38B3 family protein