PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29460.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 433aa    MW: 48629.5 Da    PI: 8.7336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29460.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-19299394395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e+++l++ d +   +W++k+++  ++ks++yvl+  + +Fvk++gL++gD+++++ + +++++
  OGLUM04G29460.1 299 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVMLKMDDfKLETTWNFKYRFwpNNKSRMYVLE-STGGFVKQHGLQTGDIFIIYKS-SESEK 390
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      lvv+
  OGLUM04G29460.1 391 LVVR 394
                      7776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MADTRGSTSS GGGDGRGREG HDDFAGGGQY NRYHRILEAV PSPLVRRENV AHHQYPTGLI  60
HHPSSTMPVA PCSYVPRYTM VPTSAMVPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN  120
FQDLRPMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP  180
HATPFHINNH DTDQGFFTLS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTHAKK  240
AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSHN SANLTIRFNC REYRVILRKE  300
LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY  360
VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE  420
ECGFAISLLT KKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-36B3 family protein