PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29070.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 839aa    MW: 93254.6 Da    PI: 5.9778
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29070.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22157258199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OGLUM04G29070.2 157 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 246
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OGLUM04G29070.2 247 EKNQLLLGIRRA 258
                      99999****997 PP
2Auxin_resp112.63.8e-37283366183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrWp S Wrs+k
  OGLUM04G29070.2 283 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVK 366
                      79*******************************986599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MVAISELGLR VCASLVWSEE EEMSSSSAAS IGPPQPPPPP APPEEEKKCL NSELWHACAG  60
PLVCLPTVGT RVVYFPQGHS EQVAASTNKE VEGHIPNYPN LPAQLICQLH DVTMHADVET  120
DEVYAQMTLQ PLNPQEQNDA YLPAEMGIMS KQPTNYFCKT LTASDTSTHG GFSVPRRAAE  180
RVFPPLDFTQ QPPAQELIAR DIHDIEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  240
VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR  300
ASPSEFVIPL SKYIKAVFHT RISVGMRFRM LFETEESSVR RYMGTITEVS DADPVRWPSS  360
YWRSVKVGWD ESTAGERPPR VSLWEIEPLT TFPMYPSLFP LRVKHPWYSG VASLHDDSNA  420
LMWLRGVAGE GGFQSLNFQS PGIGSWGQQR LHPSLLSSDH DQYQAVVAAA AASQSGGYLK  480
QQFLHLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQIINPD AQNIQTMLSP SAIQQQLQQM  540
QQVQNDQKQK IQPDQSYQVP TSAVLPSPTS LPSHLREKFG FSDPNANSSS FITSSSSDNM  600
LDSSFLQGSS KAVDLSRFNQ PVASEQQQQQ QQQQAWKQKF MGSQSVSFGG SVLHNSPTSK  660
DGSVENKIGR DVQNQSLFSP QVDSSSLLYN MVPNLTSNVS DGNLSTIPSG STYLQNAMYG  720
CLDDSSGFLQ NTGENDPATR TFVKVYKSGS VGRSLDITRF SNYAELREEL GQMFGIKGQL  780
DDPDRSGWQL VFVDRENDVL LLGDDPWESF VNSVWYIKIL SPEDVHKMGK QGNDPRYLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein