PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G27880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 416aa MW: 45008.6 Da PI: 7.8038

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G27880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	184	262	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ OGLUM04G27880.1 184 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 262 6****************************98725689***********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGS IQRDHHHHHH QQQLGYNLEP 60 SSLALLPPSN AAAAAAHHAT IAHASPHDLL QFYPTSHYLA AAGGAGGGGN PYSHFTAAAA 120 AGSTFQSYYQ QPPQAAPEYY FPTLVSSAEE NMASFAATQL GLNLGYRTYF PPRGGYTYGH 180 HPPRCQAEGC KADLSSAKRY HRRHKVCEHH SKAPVVVTAG GLHQRFCQQC SRFHLLDEFD 240 DAKKSCRKRL ADHNRRRRKS KPSDGEHSGE KRRAQANKSA ATKDKAGSSS KNAGIGDGFE 300 TQLLGGAHMS KDQDQAMDLG EVVKEAVDPK GKASMQQQQQ QAHHGIHQQS HQQHGFPFPS 360 SSGSCLFPQS QGAVSSTDTS NIAQVQEPSL AFHQQHHQHS NILQLGQAMF DLDFDH

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MMNVPSAAAA SSCDDFGYNA TPPPPPSLLP IMDQDGGGGS IQRDHHHHHH QQQLGYNLEP  60
SSLALLPPSN AAAAAAHHAT IAHASPHDLL QFYPTSHYLA AAGGAGGGGN PYSHFTAAAA  120
AGSTFQSYYQ QPPQAAPEYY FPTLVSSAEE NMASFAATQL GLNLGYRTYF PPRGGYTYGH  180
HPPRCQAEGC KADLSSAKRY HRRHKVCEHH SKAPVVVTAG GLHQRFCQQC SRFHLLDEFD  240
DAKKSCRKRL ADHNRRRRKS KPSDGEHSGE KRRAQANKSA ATKDKAGSSS KNAGIGDGFE  300
TQLLGGAHMS KDQDQAMDLG EVVKEAVDPK GKASMQQQQQ QAHHGIHQQS HQQHGFPFPS  360
SSGSCLFPQS QGAVSSTDTS NIAQVQEPSL AFHQQHHQHS NILQLGQAMF DLDFDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	273	RRRRKSKPSDGEHSGEKRR
2	255	285	RRRRKSKPSDGEHSGEKRRAQANKSAATKDK
3	256	261	RRRKSK
4	256	286	RRRRKSKPSDGEHSGEKRRAQANKSAATKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G27880.1