PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G27380.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 493aa MW: 52458.3 Da PI: 8.2356 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.2e-17 | 110 | 159 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OGLUM04G27380.2 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 159 78*******************......55************************997 PP | |||||||
2 | AP2 | 26.6 | 1.5e-08 | 250 | 285 | 11 | 55 |
AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ ++++ +++++lg f+t+eeAa+a+++a+ k +g OGLUM04G27380.2 250 SSCGFLVH---------CRYVYLGLFDTEEEAARAYDRAAIKCNG 285 23334444.........6**********************99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence |
MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV 60 PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK SRRGPRSRSS QYRGVTFYRR 120 TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN 180 LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVLI DHRFFLFRSI 240 VRSWAISRKS SCGFLVHCRY VYLGLFDTEE EAARAYDRAA IKCNGKDAVT NFDPSIYAGE 300 FEPPAAATGD AAEHNLDLSL GSSAGSKRGN VDGGGDDEIT GGGGGGAGSD QRVPMAFDLD 360 WQTAAARSTK AKFDQNSNHP QMPPVLQVTH LPFSPRHHHQ FLSNGDPGTA GGLSLTIGAG 420 MAGHWPPQQQ QGWGNAGGMS WPLPPHPPPP PTNAAAAATA TAAAASSRFP PYIATQASTW 480 LQKNGFHSLT RPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 2e-83 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM04G27380.2 |