PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G24010.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 383aa MW: 41139.8 Da PI: 7.0543

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G24010.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	7.9e-25	114	158	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ OGLUM04G24010.1 114 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 158 79****************************************996 PP
2	QLQ	59	1.3e-20	53	88	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++ OGLUM04G24010.1 53 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 88 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MAMPFASLSP AADHRPSSIF PFCRSSPLSA VGEEAQQHMM GARWAAAVAR PPPFTAAQYE 60 ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC 120 RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPHSQPPAT APAAAVTSTA 180 FQNHSLYPAI ANGGGANGGG GGGGGGGSAP GSFALGSNTQ LHMDNAASYS TVAGAGNKDF 240 RYSAYGVRPL ADEHSPLITG AMDTSIDNSW RLLPSQTSTF SVSSYPMLGN LSELDQNTIC 300 SLPKAEREPL SFFGSDYVTV DSGKQENQTL RPFFDEWPKA RDSWPDLADD NSLATFSATQ 360 LSISIPMATS DFSTTSSRSP NDE

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MAMPFASLSP AADHRPSSIF PFCRSSPLSA VGEEAQQHMM GARWAAAVAR PPPFTAAQYE  60
ELEQQALIYK YLVAGVPVPA DLLLPIRRGL DSLASRFYHH PVLGYGSYFG KKLDPEPGRC  120
RRTDGKKWRC SKEAAPDSKY CERHMHRGRN RSRKPVEAQL VAPHSQPPAT APAAAVTSTA  180
FQNHSLYPAI ANGGGANGGG GGGGGGGSAP GSFALGSNTQ LHMDNAASYS TVAGAGNKDF  240
RYSAYGVRPL ADEHSPLITG AMDTSIDNSW RLLPSQTSTF SVSSYPMLGN LSELDQNTIC  300
SLPKAEREPL SFFGSDYVTV DSGKQENQTL RPFFDEWPKA RDSWPDLADD NSLATFSATQ  360
LSISIPMATS DFSTTSSRSP NDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-47	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G24010.1