PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G22780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 400aa MW: 42805.7 Da PI: 7.128

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G22780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.2	9.2e-30	87	175	1	85
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + OGLUM04G22780.1 87 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 175 89*************************955556889**********************************************854 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS 60 SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN 120 EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT 180 RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG 240 FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP 300 MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DANALSLRMP GWQRPAPLRS 360 LELPPHVPAG AAGAESSAAS SPSSSSSSKR EAHSSLDLDL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MEQEQDEEEE EAEASPREIP FMTSAAAAAT ASSSSPTSVS PSATASAAAS TSASGSPFRS  60
SDGAGASGSG GGGGGEDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSAAN  120
EKGLLLSFED RTGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFCRGAAEAT  180
RDRLFIDWKR RADVRDPHRF QRLPLPMTSP YGPWGGGAGA FFMPPAPPAT LYEHHRFRQG  240
FDFRNINPAV PARQLVFFGS PGTGIHQHPP LPPPPPPPPP PHQLHITVHH PSPVVTAGLP  300
MVVDSVPHVN NPAAASKRVR LFGVNLDNPH PDGGQSSSGH DANALSLRMP GWQRPAPLRS  360
LELPPHVPAG AAGAESSAAS SPSSSSSSKR EAHSSLDLDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	6e-62	B3 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G22780.1