PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G21260.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 554aa MW: 60524.8 Da PI: 4.8053

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G21260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.6e-13	378	424	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++++P+ K++Ka+iLe+++ Y+k L OGLUM04G21260.1 378 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 424 57999********************66......*************977 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
MASAPPVQEE PLQPGTNHFR SLLAAAVRSI SWSYAIFWSI STSCPGVLTW NDGFYNGVVK 60 TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV 120 CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKTIICIPF TSGVLELGTT 180 DPVLEDPNLV NRIVAYFQEL QFPICLEVLM STSPSPNETE DADIVSEGLI THNAIEEGQM 240 VVSDECVSNA NRDPITMEID ELYSIYEDLD LDMDLDLDTV RFLEDNGWPV NPSSFQLVPA 300 SSTEAVAAAA AANDVDGVAN SQVSCFMAWK SAKSNEMAVP VVTGIESQKL LKKVVDCGAR 360 MSTGRGSRAA LTQESGIKNH VISERRRREK LNEMFLILKS IVPSIHKVDK ASILEETIAY 420 LKVLEKRVKE LESSSEPSHQ RATETGQQRR CEITGKELVS EIGVSGGGDA GREHHHVNVT 480 VTDKVVLLEV QCRWKELVMT RVFDAIKSLC LDVLSVQASA PDGLLGLKIQ AKFACSGSVA 540 PGMISEALQK AIGG

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

MASAPPVQEE PLQPGTNHFR SLLAAAVRSI SWSYAIFWSI STSCPGVLTW NDGFYNGVVK  60
TRKISNSADL TAGQLVVQRS EQLRELYYSL LSGECDHRAR RPIAALSPED LADTEWYYVV  120
CMTYSFQPGQ GLPGKSYASN ASVWLRNAQS ADSKTFLRSL LAKTIICIPF TSGVLELGTT  180
DPVLEDPNLV NRIVAYFQEL QFPICLEVLM STSPSPNETE DADIVSEGLI THNAIEEGQM  240
VVSDECVSNA NRDPITMEID ELYSIYEDLD LDMDLDLDTV RFLEDNGWPV NPSSFQLVPA  300
SSTEAVAAAA AANDVDGVAN SQVSCFMAWK SAKSNEMAVP VVTGIESQKL LKKVVDCGAR  360
MSTGRGSRAA LTQESGIKNH VISERRRREK LNEMFLILKS IVPSIHKVDK ASILEETIAY  420
LKVLEKRVKE LESSSEPSHQ RATETGQQRR CEITGKELVS EIGVSGGGDA GREHHHVNVT  480
VTDKVVLLEV QCRWKELVMT RVFDAIKSLC LDVLSVQASA PDGLLGLKIQ AKFACSGSVA  540
PGMISEALQK AIGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	389	ERRRRE
2	385	390	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.1	1e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G21260.1