PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20120.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 436aa    MW: 46125.7 Da    PI: 7.787
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20120.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19351385135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  OGLUM04G20120.2 351 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 385
                      *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MLHQTLIPSS TLSFPSSAPL SPPLLFASNA AATAAQGSNT SRSSSAMPSY AHHHSSLDGK  60
MDALKSSCRS EEAADEGAAA APSAWGMVER DGFSVEDLLD LEEFCEAEKD AAEENEQALA  120
VVAAPEEEKS EDDSQPSSVV TYELVAPPPP HPEIVDLPAH DVEELEWVSR IMDDSLSELP  180
PPPQPPASVV ASLAARPPQP RQLQRRPQDG AYRALPPASY PVRTPTICAL STEALVPVKA  240
KRSKRSRATA WSLSGAPPFS DSTSSSSTTT TSSCSSSASF SSFSPLLKFE WHPLGGTSDL  300
PDDHLLPPGK KSKHGKNGKN KPKKRGRKPK QLPPHPSGAA ASASAPGDRR CSHCGVQKTP  360
QWRAGPEGAK TLCNACGVRY KSGRLLPEYR PACSPTFVSA IHSNSHRKVL EMRRKKEVGS  420
GLLTAAAAAA PAVASF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA family protein