PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G20120.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 475aa MW: 50697.9 Da PI: 6.9706

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G20120.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.9	3.3e-19	390	424	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l OGLUM04G20120.1 390 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 424 *******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MLHQTLIPSS TLSFPSSAPL SPPLLFASNA AATAAQGSNT SRSSSAMPSY AHHHSSLGDD 60 EEENGRFLSL CLLGFWNFGN LWFLLCVYVG AFWTEKDGKM DALKSSCRSE EAADEGAAAA 120 PSAWGMVERD GFSVEDLLDL EEFCEAEKDA AEENEQALAV VAAPEEEKSE DDSQPSSVVT 180 YELVAPPPPH PEIVDLPAHD VEELEWVSRI MDDSLSELPP PPQPPASVVA SLAARPPQPR 240 QLQRRPQDGA YRALPPASYP VRTPTICALS TEALVPVKAK RSKRSRATAW SLSGAPPFSD 300 STSSSSTTTT SSCSSSASFS SFSPLLKFEW HPLGGTSDLP DDHLLPPGKK SKHGKNGKNK 360 PKKRGRKPKQ LPPHPSGAAA SASAPGDRRC SHCGVQKTPQ WRAGPEGAKT LCNACGVRYK 420 SGRLLPEYRP ACSPTFVSAI HSNSHRKVLE MRRKKEVGSG LLTAAAAAAP AVASF

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MLHQTLIPSS TLSFPSSAPL SPPLLFASNA AATAAQGSNT SRSSSAMPSY AHHHSSLGDD  60
EEENGRFLSL CLLGFWNFGN LWFLLCVYVG AFWTEKDGKM DALKSSCRSE EAADEGAAAA  120
PSAWGMVERD GFSVEDLLDL EEFCEAEKDA AEENEQALAV VAAPEEEKSE DDSQPSSVVT  180
YELVAPPPPH PEIVDLPAHD VEELEWVSRI MDDSLSELPP PPQPPASVVA SLAARPPQPR  240
QLQRRPQDGA YRALPPASYP VRTPTICALS TEALVPVKAK RSKRSRATAW SLSGAPPFSD  300
STSSSSTTTT SSCSSSASFS SFSPLLKFEW HPLGGTSDLP DDHLLPPGKK SKHGKNGKNK  360
PKKRGRKPKQ LPPHPSGAAA SASAPGDRRC SHCGVQKTPQ WRAGPEGAKT LCNACGVRYK  420
SGRLLPEYRP ACSPTFVSAI HSNSHRKVLE MRRKKEVGSG LLTAAAAAAP AVASF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	6e-39	GATA family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G20120.1