PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G19890.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 265aa    MW: 28085.6 Da    PI: 7.7843
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G19890.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.41.3e-64262176170
            YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleelk 76 
                        eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+      aa+   +  + +                        ++e+  
  OGLUM04G19890.1  26 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphglldevpsfqapaslMTEQAS 119
                      579*******************************************998665555554555555566668999*99999999988765444444 PP

            YABBY  77 veeenlksnvekeesastsvssekl......senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                       + ++++s +++     ++ +++++       ++++ + p+ +p ++r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahf
  OGLUM04G19890.1 120 PNVSSITSSNSSCA---NNAPATSMasaankATQREPQQPKnAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHF 210
                      44444433332222...22222222233323333333444415569************************************************ PP

            YABBY 164 Pkihfgl 170
                      P+ihfgl
  OGLUM04G19890.1 211 PHIHFGL 217
                      *****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MSSAPETFSL DHLSQHQQQQ PPPLAEQEQL CYVHCNFCDT ILAVGVPCSS LFKTVTVRCG  60
HCANLLSVNL RGLLLPAAAS TANQLPFGQA LLSPTSPHGL LDEVPSFQAP ASLMTEQASP  120
NVSSITSSNS SCANNAPATS MASAANKATQ REPQQPKNAP SANRTSEKRQ RVPSAYNRFI  180
KDEIQRIKAS NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGLKKTGIQS QDGAGECMLF  240
KDGLYAAAAA AAAATAASSM GVTPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-56YABBY family protein