PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G18300.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 392aa    MW: 43587.9 Da    PI: 8.3116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G18300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.64e-09661797126
              NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                      F+Pt e++v++yL  + + +   l + ++++d+y ++P  L     +a+e+ ew+fF++r++    g  ++ra   g  + + + k   +   +
  OGLUM04G18300.1  66 FDPTAEDIVNRYLPWRRALRCDALPRQVHDADVYGAHPALLAsVYPAANERfEWFFFVCRRRCP-GG--RRRA-GPGDYRLSQEAK---H---R 149
                      9************87766666666667**************83333344457******998854.33..2333.445555444322...2...2 PP

              NAM  99 lvglkktLvfykgrapkg..ektdWvmhey 126
                           +++ +y+ ++  g  ++t+W m ey
  OGLUM04G18300.1 150 GNAFCHSFRYYEYEDAGGgfRETEWRMVEY 179
                      235667888886655544235899999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MRPRASQAAA PETAAAAASL REEETEDGWV FLAGRSRATR PPPPPPSPMA RAVASGGSGG  60
GGVQPFDPTA EDIVNRYLPW RRALRCDALP RQVHDADVYG AHPALLASVY PAANERFEWF  120
FFVCRRRCPG GRRRAGPGDY RLSQEAKHRG NAFCHSFRYY EYEDAGGGFR ETEWRMVEYG  180
DRGRDAGAGG SEGFELVVCK VYPARGGALH ERLGADRAAL ATRHRADEDA KPQVLVQLYL  240
ASLRLGNPLA CRVHRADDVF DAHPAVITAA LPAANDRCEW LFAAVRPRGH AQGHGDGAPP  300
RPRKAGPGAY VPVRECRVVD GRRGDMGCRL VFWYREDDEE ARLASRRTEW WMDEYRFGPD  360
FPYGELPAPM ARGEDEELVV YKVYPRLVGN RR