PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G15580.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 709aa MW: 73037.1 Da PI: 8.1195

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G15580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	189	210	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk+F + + H+r+H OGLUM04G15580.1 189 TCPECGKVFMSDKAMYGHLRSH 210 8*******************99 PP
2	zf-C2H2	13	0.00032	463	485	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+Fs++ L H H OGLUM04G15580.1 463 YECSECHKTFSTHQALGGHVAAH 485 99***********9998887666 PP
3	zf-C2H2	11.1	0.0012	573	595	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ L H+r+H OGLUM04G15580.1 573 HQCLRCPMVFPTGQALGGHMRKH 595 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MAASGQVRCL LPLRVALSPP LPPWPPATMV MPPLLAAAAA MAASGQVRRL LSLRAALPSP 60 WPLATMAPSS SRHRHHGCRC PGFQYAFVRE KAAGDHLSLG YMQHGDNNNK NKKGDLSNNL 120 DLSSSPLLMD SRGQAYYHRA AAAAAAVAAG DATDGEEPAA AELAPKAVRS KKKLAVEAQG 180 GAAVRDDLTC PECGKVFMSD KAMYGHLRSH PLRKHKGAAR LAAVAAAAAD DASVAAGVKP 240 RPWKVPRTKE EAELGDDRHP GRSPVTGKRG RPASSVSSSG SAPAPAPPAS SRLQLVITEE 300 EEAAMTLLDI ASGCSLDHQP TQPAHVADAA LLAPASDQMP SVDVEQGVLA VAEHRTWEAE 360 KPALVEHVFG IVKEHVATVA ADAEPQSPEA KTPVKLGPVT DQAVPVLGDK NDDGHADMPV 420 SPGGGTTKKP LKRRLQDVET KHPTAPPPPP VRRIPSPASK RKYECSECHK TFSTHQALGG 480 HVAAHKRQKK SCAEQQQEAV AAAAQVARHN FLAHQRPAGV VVAVDATVVA AAGGGIAIGP 540 LGEEGLVGPP PPPPPPPPPP APAPAPAPAP QQHQCLRCPM VFPTGQALGG HMRKHFLEAK 600 EQEQLLAIAI ANANANANAN ANANANAAPE PPPMMANAAP VPPPSMANGA GPVPPPIAGA 660 ALPPPMANGA AAAAPPGGNP APPVGPQPGV NMFDLNELPN EDAGENQQP

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MAASGQVRCL LPLRVALSPP LPPWPPATMV MPPLLAAAAA MAASGQVRRL LSLRAALPSP  60
WPLATMAPSS SRHRHHGCRC PGFQYAFVRE KAAGDHLSLG YMQHGDNNNK NKKGDLSNNL  120
DLSSSPLLMD SRGQAYYHRA AAAAAAVAAG DATDGEEPAA AELAPKAVRS KKKLAVEAQG  180
GAAVRDDLTC PECGKVFMSD KAMYGHLRSH PLRKHKGAAR LAAVAAAAAD DASVAAGVKP  240
RPWKVPRTKE EAELGDDRHP GRSPVTGKRG RPASSVSSSG SAPAPAPPAS SRLQLVITEE  300
EEAAMTLLDI ASGCSLDHQP TQPAHVADAA LLAPASDQMP SVDVEQGVLA VAEHRTWEAE  360
KPALVEHVFG IVKEHVATVA ADAEPQSPEA KTPVKLGPVT DQAVPVLGDK NDDGHADMPV  420
SPGGGTTKKP LKRRLQDVET KHPTAPPPPP VRRIPSPASK RKYECSECHK TFSTHQALGG  480
HVAAHKRQKK SCAEQQQEAV AAAAQVARHN FLAHQRPAGV VVAVDATVVA AAGGGIAIGP  540
LGEEGLVGPP PPPPPPPPPP APAPAPAPAP QQHQCLRCPM VFPTGQALGG HMRKHFLEAK  600
EQEQLLAIAI ANANANANAN ANANANAAPE PPPMMANAAP VPPPSMANGA GPVPPPIAGA  660
ALPPPMANGA AAAAPPGGNP APPVGPQPGV NMFDLNELPN EDAGENQQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	428	435	KKPLKRRL

Link Out ? help Back to Top
Ensembl	OGLUM04G15580.1