PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G13780.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 417aa MW: 43986.3 Da PI: 6.8105

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G13780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.6	3.3e-13	68	149	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ +++g+ + s +qCk++++ l+k+yk +++ + ++++f +l+ OGLUM04G13780.1 68 WSEGATAALIDAWGERFVALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 149 ***********************************87888866222667************99988876.......488888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAASPNPGGG 60 GGGREDAWSE GATAALIDAW GERFVALGRG SLRHPQWQEV ADAVSSREGY AKAPKSDVQC 120 KNRIDTLKKK YKIERAKPAS SWQFFGRLDD LLAPTFNQKP SGNGGGGVGA SVNGRNPVPA 180 ALRVGFPQRS RTPLMPAPVS AVKRRALSPE PSASSESSDG FPPEREPAFP PLPLPPPPNG 240 KRSRADEGRG GGAGGGGDRA QGLRELAQAI RRFGEAYERV ETAKLEQSAE MERRRLDFAS 300 ELESQRVQFF LNTQMELSQV KNHSSSPANA AAPPGATGGA GGTSRRMASV NDASASGNYH 360 RRYRVSDGGR HRHHPQPPPS RPHYQYHENN IAVAAAAAAS DGEQSDDEED DDEEESQ

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAASPNPGGG  60
GGGREDAWSE GATAALIDAW GERFVALGRG SLRHPQWQEV ADAVSSREGY AKAPKSDVQC  120
KNRIDTLKKK YKIERAKPAS SWQFFGRLDD LLAPTFNQKP SGNGGGGVGA SVNGRNPVPA  180
ALRVGFPQRS RTPLMPAPVS AVKRRALSPE PSASSESSDG FPPEREPAFP PLPLPPPPNG  240
KRSRADEGRG GGAGGGGDRA QGLRELAQAI RRFGEAYERV ETAKLEQSAE MERRRLDFAS  300
ELESQRVQFF LNTQMELSQV KNHSSSPANA AAPPGATGGA GGTSRRMASV NDASASGNYH  360
RRYRVSDGGR HRHHPQPPPS RPHYQYHENN IAVAAAAAAS DGEQSDDEED DDEEESQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-38	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G13780.1