PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G10170.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CAMTA

Protein Properties

Length: 956aa MW: 107252 Da PI: 6.3196

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G10170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.1	2.3e-55	11	127	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np f OGLUM04G10170.1 11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCF 104 67779*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylev 117 qrrc+w+Le ++e+ivlv+y+ev OGLUM04G10170.1 105 QRRCFWMLEPAYEHIVLVQYREV 127 *******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF 60 RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV 120 LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS 180 SVTESSLEQS IEVRRVDNSN STNKSGLNRA LKQIVEQLSL GDDEDDDYIH QAQPFDFITN 240 IEAPDRQRDA SRNVSGGSQA KQIRAEEMQN GLGRGIPSSW EDSTPHYPQN SEYQPPGSLY 300 NSDMQQISAA KRFLLETEDS IDSPSYNYVP REEGNNGTNT LSVHDYSLQS SLNPDWKKTA 360 PLTLQSNLYG SEIPSLLLDH GQFESLSSGE NTRLILGQNP RFSIREVSPE WTYCYEITKV 420 IITGDFLCDP SSSCWAVMFG DSEVPAEIVQ AGVLRCHTPL HSSGKLTICV TSGNREICSE 480 VKDFEFRAKS TASSFLDISP SSRSLKSSEE LLLLAKFVRM LLCENGSHAN SNGDPQSVQC 540 PKLKMNDEHW QRLIDELKGG CENPLNVSDW IMEELLKSKL QQWLSVKLQG YDGIACSLSK 600 HEQGIIHLIS ALGYEWALSS ILSADVGINF RDTNGWTALH WAAYFGREKM VAALLAAGAS 660 APAVTDPTAQ DPVGKTAAFL ASEWGHLGLA AYLSEVSLTS YLASLTIQES DTSKGSAAAE 720 AERAVESISQ RNAQLHGGTE DELSLKDSLA AVRNAAQAAA RIQNAFRAFS FRKRQQKTAR 780 LKDEYGMTQE DIDELAAASR SYYQSLLPNG QFYDKAAVSI QKKFKGWKGR RHFLNMRRNA 840 VKIQAHVRGH QVRKKYKTFV STVSVLEKVI LRWRRKGHGL RGFRAEQTAM AEAEEDDEDD 900 DDDDFNDDEA VKVFRRQKVD ESVKEAMSRV LSMVDSPEAR MQYRRMLEEF RQATAE

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence

MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS  180
SVTESSLEQS IEVRRVDNSN STNKSGLNRA LKQIVEQLSL GDDEDDDYIH QAQPFDFITN  240
IEAPDRQRDA SRNVSGGSQA KQIRAEEMQN GLGRGIPSSW EDSTPHYPQN SEYQPPGSLY  300
NSDMQQISAA KRFLLETEDS IDSPSYNYVP REEGNNGTNT LSVHDYSLQS SLNPDWKKTA  360
PLTLQSNLYG SEIPSLLLDH GQFESLSSGE NTRLILGQNP RFSIREVSPE WTYCYEITKV  420
IITGDFLCDP SSSCWAVMFG DSEVPAEIVQ AGVLRCHTPL HSSGKLTICV TSGNREICSE  480
VKDFEFRAKS TASSFLDISP SSRSLKSSEE LLLLAKFVRM LLCENGSHAN SNGDPQSVQC  540
PKLKMNDEHW QRLIDELKGG CENPLNVSDW IMEELLKSKL QQWLSVKLQG YDGIACSLSK  600
HEQGIIHLIS ALGYEWALSS ILSADVGINF RDTNGWTALH WAAYFGREKM VAALLAAGAS  660
APAVTDPTAQ DPVGKTAAFL ASEWGHLGLA AYLSEVSLTS YLASLTIQES DTSKGSAAAE  720
AERAVESISQ RNAQLHGGTE DELSLKDSLA AVRNAAQAAA RIQNAFRAFS FRKRQQKTAR  780
LKDEYGMTQE DIDELAAASR SYYQSLLPNG QFYDKAAVSI QKKFKGWKGR RHFLNMRRNA  840
VKIQAHVRGH QVRKKYKTFV STVSVLEKVI LRWRRKGHGL RGFRAEQTAM AEAEEDDEDD  900
DDDDFNDDEA VKVFRRQKVD ESVKEAMSRV LSMVDSPEAR MQYRRMLEEF RQATAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-149	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G10170.1