PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G09730.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 354aa MW: 36944.4 Da PI: 4.7965

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G09730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	138	182	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ eLr l+P+ +K++Ka+i Av Y+k+Lq OGLUM04G09730.1 138 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKDLQ 182 568*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG 60 DDDDNGGVDG GVGGGDDRMQ EWQNNCEGGG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD 120 GDGDNSATRK RRDRSKTIVS ERKRRVRMKE KLYELRALVP NITKMDKASI IADAVVYVKD 180 LQAHARKLKE EVAALEEARP IRPPPPSAAA QRPQRQPRRV AAAAAQLARA ADAAAVTTAA 240 AAPHGARVAH VGAAQVGEGQ FFVTVECEPA AAAARGGGGG VAAPVCAAVE SLSCFTVESS 300 TVGCSPDRVV ATLTLKVSEA EEDVSAISEC TVKLWVMAAL LKEGFRPQPT VQIS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG  60
DDDDNGGVDG GVGGGDDRMQ EWQNNCEGGG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD  120
GDGDNSATRK RRDRSKTIVS ERKRRVRMKE KLYELRALVP NITKMDKASI IADAVVYVKD  180
LQAHARKLKE EVAALEEARP IRPPPPSAAA QRPQRQPRRV AAAAAQLARA ADAAAVTTAA  240
AAPHGARVAH VGAAQVGEGQ FFVTVECEPA AAAARGGGGG VAAPVCAAVE SLSCFTVESS  300
TVGCSPDRVV ATLTLKVSEA EEDVSAISEC TVKLWVMAAL LKEGFRPQPT VQIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	145	RKRRDRSKTIVSERKRR
2	130	146	RKRRDRSKTIVSERKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	4e-21	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G09730.1