PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G08470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 424aa MW: 43651.8 Da PI: 6.5847

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G08470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.4e-10	251	298	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq OGLUM04G08470.1 251 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 298 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA 60 AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA 120 PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAAAAA 180 ARKRKSSAKP KASSSSLPTA TAATNASPKR SKVAAGAGDD GDADADAAEE KPEPAKDYIH 240 VRARRGQATD SHSLAERVRR ERISERMKLL QSLVPGCNKI TGKALMLDEI INYVQSLQRQ 300 VEFLSMKLAT MNPQLDFDSH YMPSKDMSHM PVPAYPSSDP TTTTAFSYTG SPATADPFTV 360 YNCWELDLHT AMQMGATTTG LSQDGPIATM APSPSPLPHH PPLHGFYGGQ QQQGTTVNHM 420 KAEP

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MADEHFFPAG DYFSTSSSGA GTGGAGALLP AAAYGTMTMM PPWAVAAAEQ MMMMAPAAAA  60
AEFDSALSSL VSSPQGGGGG DEMAAIGDLI GRLGSICSHG GASANNSCYS TPLSSPPRAA  120
PPPPFRGYAA AGGRLSRVSS SKSLGGAAAA LDSSEADMNP TTAAAADQPS KPSAAAAAAA  180
ARKRKSSAKP KASSSSLPTA TAATNASPKR SKVAAGAGDD GDADADAAEE KPEPAKDYIH  240
VRARRGQATD SHSLAERVRR ERISERMKLL QSLVPGCNKI TGKALMLDEI INYVQSLQRQ  300
VEFLSMKLAT MNPQLDFDSH YMPSKDMSHM PVPAYPSSDP TTTTAFSYTG SPATADPFTV  360
YNCWELDLHT AMQMGATTTG LSQDGPIATM APSPSPLPHH PPLHGFYGGQ QQQGTTVNHM  420
KAEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-46	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G08470.1