PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G01880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 362aa MW: 38441.2 Da PI: 7.992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G01880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.5	3e-07	197	219	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H OGLUM04G01880.1 197 HYCQVCGKGFKRDANLRMHMRAH 219 68*******************99 PP
2	zf-C2H2	12.9	0.00032	281	304	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k F s+L++H + + OGLUM04G01880.1 281 YVCGRCGgKQFAVLSDLRTHEKHC 304 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAPA PAAASDDVLA YHVSVLRDKV QQLEPLVGMV 60 VSPAAAHGHL RRDAAAMAAS SACSVLQEIT AAASAVAHRL EQASAASSSF RRRVAFADDA 120 HAGGEQMFAA GAHGGGEGGG DEADASLFHH QPTVFRAGAT TTVAASSSGR GGGDDDGDGE 180 VDVVELEASY LLARYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTAAALT STAMKATARR 240 CSYSCPAEGC RWNRRHPRFQ ALKSVVCAKN HYRRSHCPKM YVCGRCGGKQ FAVLSDLRTH 300 EKHCGELRWL CSCGTFFSRK DKLMGHVALF ATAGHAPVPV APEASPSTTT TGTTTERSRD 360 CL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MNPQEFQFFQ GVEQEMLLLS HGGGGAAAPA PAAASDDVLA YHVSVLRDKV QQLEPLVGMV  60
VSPAAAHGHL RRDAAAMAAS SACSVLQEIT AAASAVAHRL EQASAASSSF RRRVAFADDA  120
HAGGEQMFAA GAHGGGEGGG DEADASLFHH QPTVFRAGAT TTVAASSSGR GGGDDDGDGE  180
VDVVELEASY LLARYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTAAALT STAMKATARR  240
CSYSCPAEGC RWNRRHPRFQ ALKSVVCAKN HYRRSHCPKM YVCGRCGGKQ FAVLSDLRTH  300
EKHCGELRWL CSCGTFFSRK DKLMGHVALF ATAGHAPVPV APEASPSTTT TGTTTERSRD  360
CL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-75	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM04G01880.1