PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G40250.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1741aa MW: 193063 Da PI: 5.9915

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G40250.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.7e-08	1591	1632	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ E ++++++ +q+G++ ++ I + ++ ++++q++ ++ OGLUM03G40250.2 1591 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 1632 569*****************.*****.******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1741 aa Download sequence
MLRAAYRPGL FLRNNLLALY CRCGDMWHAR LLFDGMPRRD AVSWNTLIAG YSGLGSPRLA 60 LDAFRGARAS GDGVDRFTFA AALASCAREG NWRNGRVVHG LAVVSGLART AFLTNSVIDM 120 YAKCGMIDEV RLLFDRAEER DEASWNLLLS AYVRMGWPEV AVNVLVWMHR SGVKLDSFAL 180 GGILKACSEL GDSEDVRRML HGCVVKVGLD LDVFVGSAMV DMYAKNGGLE EAIKVFDCIP 240 NQNVVVYNAM IAGFARLGND PCPEIRIEAV MLFSNMLKKR IKPSKFTFKS VLEVCNLTNA 300 VRCGRQIHAH VILSGLQADE FIASVLINLY SKARSVNDSL RCFDMTLKED VFIWTSMITA 360 FVQNEHFEKA LYLFRELLYT RKETDQFTIS SVMSACAALS VPTTCKQIHC HAVKTGLDQF 420 TVSGNSQIAM YRNIGDLKAS KLTFEQISCL DTFSWSAMIL SYAVHGYESK ALELFEKMKN 480 LGVMMNEIAS LAVLIACSHQ GLADEGLRYY ENTIPDDGFS LDVKLKACMV DLLGRVGKIA 540 DAEDFIMSSG SENDPILWHA LLRACRVHGD KERCTKIGEK LMELEPFSAS SYVMLYNLYM 600 DAGKISLAMR TRGLMRERGI TNEAGISWTD FGGSIHNFID GDNSCSHNTI HTTLEELLVR 660 VKQKTEHGGT NIWELEFQSR KLSESSISRH GELLAVAFGL TTLPSVAPVR VMKNQRISWE 720 SHETLKLLSE ALIPGRLLPF RLPPLPLPPS PTRSIGKSNA SIAFLFFSSR SPPQTPPIPY 780 PPHTLSVAPP QPPPHPLQRR RSTGLPSIDG VTPRDGWRRR GRADAPRRRS PVGAVAASLH 840 RRPDESLAPP PIPGLLDPAC EQVRNGLFGN PKICRLGSSS PCAVSRLNRG GGKQSRGGEG 900 ILQLNPHVPS WIRPCLKGVD KLDESSGDTG HIAMIDDEAD FGNITDATEG QAAAKFHGNA 960 CASGGILDTP SEDVVTVSLG LVNNPDVALD SSTVFASVHK VSQNEENNDD LSHVATHKES 1020 MVVSDTQAPP TCCSAKTIDD LADFEGLCDD THVEEERVAK FQPKFRVKTS KAASKSQRTN 1080 QKAGVSTVDV VSQNKEDGKD QAGCNDKQLH SPTRHQESVQ ISYSQAHLGT HNSTIDDVAN 1140 SDSIMEEPAQ EEMAAKFQPR LRPKAGGASP GVAETIDAAC VATPEFGVSS ADVVSQDTEE 1200 DSHREGLSDG SCQKYIDEEA ITTSGTGPPQ DLDATVDLDS HAEMVNPHPD GSPLIIGEPS 1260 AETTVKFQPY VRRKKGKGKS VSFVPPNVSH AHTPTDTNSE TSNSSHFCKD IATGESLSNL 1320 PQQASEKICI SGEHHPDDQE CNDPENQYHE GEPYDHVIEQ EPERDVRETG TPMILRNRGK 1380 LQKDGIPEHT ADDIMDEDFG EPPSDEQDND SGDEYTARGK QKGRRKSREK NINKEPSRGT 1440 KRTSGDSTIE ESQKQKLQKN KSKTSSRGQK KTSKDSSVEQ PEKKLTHRIR RKRMEEVKTL 1500 LETPDHEIDR MKLSVTHLRL LQEAKERIKA SFVGKEIPSG PSSSNHSTSQ FGDMDDEYNE 1560 QDNWDNDRTE NHVVENTTKL NYHSYMNRQT RAKWSKSETD KFYEGLQQFG SDFAMIQHLF 1620 PDKSRNQVRQ KFKAEEKKHP MQVHDAIMHR SRDNLYFKEV IKKLNIEDVQ PDINNTHEQE 1680 GTSNEEDPGN KNIPGGLINE EENGLDWSDK ELDMHRSEVE EKEHVSTNDD DDDLGDVFDW 1740 Y

Sequence ? help Back to Top

Protein Sequence Length: 1741 aa Download sequence

MLRAAYRPGL FLRNNLLALY CRCGDMWHAR LLFDGMPRRD AVSWNTLIAG YSGLGSPRLA  60
LDAFRGARAS GDGVDRFTFA AALASCAREG NWRNGRVVHG LAVVSGLART AFLTNSVIDM  120
YAKCGMIDEV RLLFDRAEER DEASWNLLLS AYVRMGWPEV AVNVLVWMHR SGVKLDSFAL  180
GGILKACSEL GDSEDVRRML HGCVVKVGLD LDVFVGSAMV DMYAKNGGLE EAIKVFDCIP  240
NQNVVVYNAM IAGFARLGND PCPEIRIEAV MLFSNMLKKR IKPSKFTFKS VLEVCNLTNA  300
VRCGRQIHAH VILSGLQADE FIASVLINLY SKARSVNDSL RCFDMTLKED VFIWTSMITA  360
FVQNEHFEKA LYLFRELLYT RKETDQFTIS SVMSACAALS VPTTCKQIHC HAVKTGLDQF  420
TVSGNSQIAM YRNIGDLKAS KLTFEQISCL DTFSWSAMIL SYAVHGYESK ALELFEKMKN  480
LGVMMNEIAS LAVLIACSHQ GLADEGLRYY ENTIPDDGFS LDVKLKACMV DLLGRVGKIA  540
DAEDFIMSSG SENDPILWHA LLRACRVHGD KERCTKIGEK LMELEPFSAS SYVMLYNLYM  600
DAGKISLAMR TRGLMRERGI TNEAGISWTD FGGSIHNFID GDNSCSHNTI HTTLEELLVR  660
VKQKTEHGGT NIWELEFQSR KLSESSISRH GELLAVAFGL TTLPSVAPVR VMKNQRISWE  720
SHETLKLLSE ALIPGRLLPF RLPPLPLPPS PTRSIGKSNA SIAFLFFSSR SPPQTPPIPY  780
PPHTLSVAPP QPPPHPLQRR RSTGLPSIDG VTPRDGWRRR GRADAPRRRS PVGAVAASLH  840
RRPDESLAPP PIPGLLDPAC EQVRNGLFGN PKICRLGSSS PCAVSRLNRG GGKQSRGGEG  900
ILQLNPHVPS WIRPCLKGVD KLDESSGDTG HIAMIDDEAD FGNITDATEG QAAAKFHGNA  960
CASGGILDTP SEDVVTVSLG LVNNPDVALD SSTVFASVHK VSQNEENNDD LSHVATHKES  1020
MVVSDTQAPP TCCSAKTIDD LADFEGLCDD THVEEERVAK FQPKFRVKTS KAASKSQRTN  1080
QKAGVSTVDV VSQNKEDGKD QAGCNDKQLH SPTRHQESVQ ISYSQAHLGT HNSTIDDVAN  1140
SDSIMEEPAQ EEMAAKFQPR LRPKAGGASP GVAETIDAAC VATPEFGVSS ADVVSQDTEE  1200
DSHREGLSDG SCQKYIDEEA ITTSGTGPPQ DLDATVDLDS HAEMVNPHPD GSPLIIGEPS  1260
AETTVKFQPY VRRKKGKGKS VSFVPPNVSH AHTPTDTNSE TSNSSHFCKD IATGESLSNL  1320
PQQASEKICI SGEHHPDDQE CNDPENQYHE GEPYDHVIEQ EPERDVRETG TPMILRNRGK  1380
LQKDGIPEHT ADDIMDEDFG EPPSDEQDND SGDEYTARGK QKGRRKSREK NINKEPSRGT  1440
KRTSGDSTIE ESQKQKLQKN KSKTSSRGQK KTSKDSSVEQ PEKKLTHRIR RKRMEEVKTL  1500
LETPDHEIDR MKLSVTHLRL LQEAKERIKA SFVGKEIPSG PSSSNHSTSQ FGDMDDEYNE  1560
QDNWDNDRTE NHVVENTTKL NYHSYMNRQT RAKWSKSETD KFYEGLQQFG SDFAMIQHLF  1620
PDKSRNQVRQ KFKAEEKKHP MQVHDAIMHR SRDNLYFKEV IKKLNIEDVQ PDINNTHEQE  1680
GTSNEEDPGN KNIPGGLINE EENGLDWSDK ELDMHRSEVE EKEHVSTNDD DDDLGDVFDW  1740
Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.2	4e-35	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G40250.2