PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G39450.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 318aa    MW: 34245.9 Da    PI: 4.4044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G39450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.4e-2081531128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....sg 81 
                      l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++ra+      ++
  OGLUM03G39450.1   8 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVGgggggES 100
                      579************************998.88**************7335666655557779*****98755441155677776544444477 PP

              NAM  82 yWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      +Wk+ g +k+v+ ++g+ vg  + + +       +g+a++ ++  W+m ey l
  OGLUM03G39450.1 101 VWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 153
                      8********************99999966677766889999999*******76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MAEDEIALEP GYVFHPSDDG LITLFLRPSI AKIPFEDRLI NHADVYSADP AELVGEHRPA  60
PGTHGSSSVW YFFCSPRFTS KRKTSGRRQR AVGGGGGGES VWKSEGGKKA VIGADGRRVG  120
YLQKFSYGVY ESSSSGSART FTRLGWCMTE YGLDDDAIDG ADKQVLCKVY RSPRAVCAEA  180
RTAAAAKSAD SPCSGSKRKA DDGADHPEAP PSAWPRQEEA GSEHGEQPAI LPELDLDALL  240
SAPMDDSLGV EFDTATTEQY MRYLMNDEPL PWAPTMEVAG GGDEFIETTN GPCMGEEEII  300
QRLAAGETLD DILGTNPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-09NAC family protein