PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G38910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 26472.6 Da PI: 8.3258 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H OGLUM03G38910.1 100 HECHICGQGFEMGQALGGHMRRH 122 79********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MTKHPRDGEV ISLSLSLTLG AAADSGERKK PRRGSSPAAS GSGDFVCKTC SRAFPSFQAL 60 GGHRTSHLRG RHGLALGLAA ATAKETTKKV QEKPAAAATH ECHICGQGFE MGQALGGHMR 120 RHREEAAAAA AAVHAPPVLL ELFGRPLATE HRPRQGGCRG KIAIEVIESR SGGGHRAGPN 180 LEVFELGHVR SGIGATALAV TEESDTRGLG IDGASSCEAL EGGCEADHWS LGRGADGEGE 240 KRAGAGEAED KGIRRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G38910.1 |