PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G38790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 438aa MW: 47491 Da PI: 7.9709 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 3e-17 | 121 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g OGLUM03G38790.1 121 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 170 78*******************......55************************998 PP | |||||||
2 | AP2 | 42 | 2.3e-13 | 213 | 263 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +++g OGLUM03G38790.1 213 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 263 79********.7******...5...334336**********99**********99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence |
MVLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGGGG GLFRFDLLAS SPDDDECSGE 60 QHQLPAASGI VTRQLLPPPP PAAPSPAPAW QPPRRAAEDA ALAQRPVVAK KTRRGPRSRS 120 SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LEADINFNLS 180 DYEDDLKQMR NWTKEEFVHI LRRQSTGFAR GSSKFRGVTL HKCGRWEARM GQLLGKKYIY 240 LGLFDTEVEA ARAYDRAAIR FNGREAVTNF EPASYNVDAL PDAGNEAIVD GDLDLDLRIS 300 QPNARDSKSD VATTGLQLTC DSPESSNITV HQPMGSSPQW TVHHQSTPLP PQHQRLYPSH 360 CLGFLPNLQE RPMDRRPELG PMPFPTQAWQ MQAPSHLPLL HAAASSGFSA GAGAGVAAAT 420 RRQPPFPADH PFYFPPTA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.1 | 2e-90 | AP2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G38790.1 |