PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G32510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 588aa MW: 61551.3 Da PI: 7.1349

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G32510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	208	252	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OGLUM03G32510.1 208 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 252 79****************************************986 PP
2	QLQ	57.4	4.4e-20	142	178	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ OGLUM03G32510.1 142 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 178 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MQRYRHPTLK EGAVVGGGDG PGWRGGGGDG GGGRGCAVEA DTVAELQGAA VAAAAAVSEA 60 VKVAAPFLLG ASCSPGHGGE QMLSFSSSAS SCSSGGGGAA VAAAAAAGGA MPLYYGTPAS 120 CSGLSSVSLS SSMQGAMARV RGPFTPSQWI ELEHQALIYK YLAANSPVPH SLLIPIRRSL 180 TSPYSPAYFG SSTLGWGSFQ LGYSGSADPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN 240 RGRHRSRKHV EGQPGHAAKA MPAAVAAAAA SATQPSAPAA HSGGAVAGLA INHQHQQMKN 300 YAANTANPCS LQYSRDLANK HNESEQVQDS DSLSMLTSIS TRNTGSLFPF SKQHNPFEVS 360 NSRPDFGLVS PDSLMSSPHS SLENVNLLTS QSLNEQQSSV SLQHFVDWPR TPAQGALAWP 420 DAEDMQAQRS QLSISAPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LGFAANRDEV 480 NQGEANWMPM FRDSLMGGPL GEVLTKNNNM EARNCLSESL NLLNDGWDSS SGFDSSPVGV 540 LQKTTFGSVS SSTGSSPRLE NHSVYDGNSN LRDDLGSVVV NHPSIRLV

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MQRYRHPTLK EGAVVGGGDG PGWRGGGGDG GGGRGCAVEA DTVAELQGAA VAAAAAVSEA  60
VKVAAPFLLG ASCSPGHGGE QMLSFSSSAS SCSSGGGGAA VAAAAAAGGA MPLYYGTPAS  120
CSGLSSVSLS SSMQGAMARV RGPFTPSQWI ELEHQALIYK YLAANSPVPH SLLIPIRRSL  180
TSPYSPAYFG SSTLGWGSFQ LGYSGSADPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN  240
RGRHRSRKHV EGQPGHAAKA MPAAVAAAAA SATQPSAPAA HSGGAVAGLA INHQHQQMKN  300
YAANTANPCS LQYSRDLANK HNESEQVQDS DSLSMLTSIS TRNTGSLFPF SKQHNPFEVS  360
NSRPDFGLVS PDSLMSSPHS SLENVNLLTS QSLNEQQSSV SLQHFVDWPR TPAQGALAWP  420
DAEDMQAQRS QLSISAPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LGFAANRDEV  480
NQGEANWMPM FRDSLMGGPL GEVLTKNNNM EARNCLSESL NLLNDGWDSS SGFDSSPVGV  540
LQKTTFGSVS SSTGSSPRLE NHSVYDGNSN LRDDLGSVVV NHPSIRLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	34	RGGGGDGGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	3e-53	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G32510.1