PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G31860.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 420aa MW: 45657.4 Da PI: 6.5195

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G31860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.3e-07	17	60	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v OGLUM03G31860.1 17 ARACDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 60 578*****************************668888886655 PP
2	CCT	66.2	9.3e-23	336	379	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a OGLUM03G31860.1 336 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 379 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MASAAAATGA ALGARTARAC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV 60 RLPSASSSPA SSPRSAAAPR AGSDDPDAPA WLHGLKRRPR TPRTKPGGGG KHDASAATVA 120 AAAASAVPDL EAEESGIVGD TDHDVGEEDD EDLLYRVPVF DPMLAELYNP VAADDEEQQI 180 EQKPAARVVP FSEPSPEFAS GSVEADGLSG FDVPDMELAS FAADMESLLM GVDEGFDDLG 240 FLDDEKPHVK LDLDMDMDFA SISPAPEREE RKRKRPEMIL KLDYEGVIDS WARDGASPWF 300 HGERPLFDPG ESWPDFPAGS RGGLGAAVTA VTGGEREARV SRYREKRRTR LFAKKIRYEV 360 RKLNAEKRPR MKGRFVKRAA ALPPLPLPRH QHPPPPPPPR ALPPVPMMLA PRGAHGRYRF

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MASAAAATGA ALGARTARAC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV  60
RLPSASSSPA SSPRSAAAPR AGSDDPDAPA WLHGLKRRPR TPRTKPGGGG KHDASAATVA  120
AAAASAVPDL EAEESGIVGD TDHDVGEEDD EDLLYRVPVF DPMLAELYNP VAADDEEQQI  180
EQKPAARVVP FSEPSPEFAS GSVEADGLSG FDVPDMELAS FAADMESLLM GVDEGFDDLG  240
FLDDEKPHVK LDLDMDMDFA SISPAPEREE RKRKRPEMIL KLDYEGVIDS WARDGASPWF  300
HGERPLFDPG ESWPDFPAGS RGGLGAAVTA VTGGEREARV SRYREKRRTR LFAKKIRYEV  360
RKLNAEKRPR MKGRFVKRAA ALPPLPLPRH QHPPPPPPPR ALPPVPMMLA PRGAHGRYRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	LKRRPRT
2	347	363	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-23	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G31860.1