PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G28370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 186aa    MW: 21099.1 Da    PI: 9.24
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G28370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY258.61e-7941612170
            YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                      +++ ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+  +q+l+ae+h        l+++lk++++++++n++++ s+s++
  OGLUM03G28370.1   4 QIVPAPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSRY 89 
                      67889*******************************************************9........899********************** PP

            YABBY  96 vssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       ++ ++ s+n++e++ +    +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  OGLUM03G28370.1  90 GRVPMMfSKNDTEHMLH----VRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
                      **99988999*****98....9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSAQIVPAPE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP  60
AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRPP EKRQRVPSAY  120
NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSHESGKKL DEAIGAPSPQ  180
KVQRLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.12e-57YABBY family protein