PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G28230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YA | ||||||||
Protein Properties | Length: 390aa MW: 40721.6 Da PI: 8.0122 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 95.8 | 4.8e-30 | 205 | 261 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+++e++l k+rkpylheSRh+hA+rR+RgsgGrF OGLUM03G28230.1 205 DAPIYVNAKQYEGILRRRRARAKAQRENRL-VKGRKPYLHESRHRHAMRRARGSGGRF 261 68****************************.**************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence |
MAIAVEEGLH LPPQAEILLD AIGGVAVACV LEPPCFSFSL SLSSARETTT TVAAAMLSFK 60 QSHEGFGHVA AAGAGPQQQQ QPWWAGSQLL YGEASPEEAA LRDGGQFQVV PGGRAALDPA 120 APEPEKTAVP SMPKRGGGGG APEVLKFSVF SGNLEPGDTG EKNREHSATI AMQSLLPEYN 180 GHFELGLGQS MSGGRMLLPL NAPADAPIYV NAKQYEGILR RRRARAKAQR ENRLVKGRKP 240 YLHESRHRHA MRRARGSGGR FLNTKKEATA AGCGGSSKTP LASLVSPADV VHRPGSRGGG 300 AGRASSLSGS DVSSPGGGMY DHHRHDDADA ADHYNSIDHH LRTPFFTPLP IIMDSGGGGG 360 DHASHSAAAV AAPFRWATAA GDGCCELLKA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 255 | RHRHAMRRAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 4e-22 | NF-YA family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G28230.1 |