PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G27730.4

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 514aa MW: 53611.9 Da PI: 7.0552

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G27730.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.7	7.6e-17	327	373	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq OGLUM03G27730.4 327 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 373 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAQGSS 60 AAVQEDEAGL WFPFALADSL DKDIFSDLFY EAPVAATAAA APAGPGAGAD GEGKTCKGDT 120 AMAEEERGGP GAASEAPREL MPPPKSTHAS CSRQQTMSLA DGGDNAGDLS ELVRARRSSG 180 GAARRKAEAG GGGGGASSSM LSAIGSSICG SNQVQVQQRT ASEPGRRGAP PSAVGSANAI 240 PCGGRGHGHG HEATTVASSS GRSNCCFGTT TTTEPTSTSN RSSKRKRLDT TEDSESPSED 300 AESESAALAR KPPAKMTTAR RSRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS 360 MLDEAIEYLK SLQLQLQMMW MGSGMAPPVM FPGVHQYLPR MGVGMGAAAA AAMPRMPFMA 420 APQPVVPTPP VNHLADGSPG YRGHMPAAAA AAVGLAEPYA HYLGVNHLQP PPTQGVGYYP 480 LGAKAVQQQQ NPPLHVPNGS IMPPENAPNT GSGV

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAQGSS  60
AAVQEDEAGL WFPFALADSL DKDIFSDLFY EAPVAATAAA APAGPGAGAD GEGKTCKGDT  120
AMAEEERGGP GAASEAPREL MPPPKSTHAS CSRQQTMSLA DGGDNAGDLS ELVRARRSSG  180
GAARRKAEAG GGGGGASSSM LSAIGSSICG SNQVQVQQRT ASEPGRRGAP PSAVGSANAI  240
PCGGRGHGHG HEATTVASSS GRSNCCFGTT TTTEPTSTSN RSSKRKRLDT TEDSESPSED  300
AESESAALAR KPPAKMTTAR RSRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS  360
MLDEAIEYLK SLQLQLQMMW MGSGMAPPVM FPGVHQYLPR MGVGMGAAAA AAMPRMPFMA  420
APQPVVPTPP VNHLADGSPG YRGHMPAAAA AAVGLAEPYA HYLGVNHLQP PPTQGVGYYP  480
LGAKAVQQQQ NPPLHVPNGS IMPPENAPNT GSGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	337	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-33	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G27730.4