PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G27730.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 540aa MW: 56442.4 Da PI: 7.208

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G27730.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	360	399	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq OGLUM03G27730.2 360 RRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 399 8****************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAQGSS 60 AAVQEDEAGL WFPFALADSL DKDIFSDLFY EAPVAATAAA APAGPGAGAD GEGKTCKGDT 120 AMAEEERGGP GAASEAPREL MPPPKSTHAS CSRQQTMSLA DGGDNAGDLS ELVRARRSSG 180 GAARRKAEAG GGGGGASSSM LSAIGSSICG SNQVQVQQRT ASEPGRRGAP PSAVGSANAI 240 PCGGRGHGHG HEATTVASSS GRSNCCFGTT TTTEPTSTSN RSSKRKRLDT TEDSESPSED 300 AESESAALAR KPPAKMTTAR RSRAAEVHNL SERVRPNPFL LVFNAMGSCL TLMPLAPFVR 360 RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQMMWMGSG MAPPVMFPGV 420 HQYLPRMGVG MGAAAAAAMP RMPFMAAPQP VVPTPPVNHL ADGSPGYRGH MPAAAAAAVG 480 LAEPYAHYLG VNHLQPPPTQ GVGYYPLGAK AVQQQQNPPL HVPNGSIMPP ENAPNTGSGV

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MNQFVPDWSN MGDASRTLGE DDNLIELLWC NGHVVMQSQN HHRKLPPRPP EKAAAAQGSS  60
AAVQEDEAGL WFPFALADSL DKDIFSDLFY EAPVAATAAA APAGPGAGAD GEGKTCKGDT  120
AMAEEERGGP GAASEAPREL MPPPKSTHAS CSRQQTMSLA DGGDNAGDLS ELVRARRSSG  180
GAARRKAEAG GGGGGASSSM LSAIGSSICG SNQVQVQQRT ASEPGRRGAP PSAVGSANAI  240
PCGGRGHGHG HEATTVASSS GRSNCCFGTT TTTEPTSTSN RSSKRKRLDT TEDSESPSED  300
AESESAALAR KPPAKMTTAR RSRAAEVHNL SERVRPNPFL LVFNAMGSCL TLMPLAPFVR  360
RRDRINEKMR ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQMMWMGSG MAPPVMFPGV  420
HQYLPRMGVG MGAAAAAAMP RMPFMAAPQP VVPTPPVNHL ADGSPGYRGH MPAAAAAAVG  480
LAEPYAHYLG VNHLQPPPTQ GVGYYPLGAK AVQQQQNPPL HVPNGSIMPP ENAPNTGSGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-28	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G27730.2