PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27220.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 723aa    MW: 80575.3 Da    PI: 6.4846
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27220.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18421221499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++p +fa++++g    s  + l+++sg++W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  OGLUM03G27220.1  42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                      45899*****888666..6779***************..5555555***************************99999..8888875 PP
2B336.58.4e-122673381584
                      -EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  15 rlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       + ++ +fa ++ g+ +  +++++e   g     +W v++  r +s++ + ++GW++F+++ngL + D+++F+l
  OGLUM03G27220.1 267 TVGVSPEFAGRYLGP-AMAREVVMERGGGggggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 338
                      556778888888444.45668999998778999*******65555555.6788*******************96 PP
3B351.42e-163884661799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      ++p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl+ GWkeFv+ ng++egD ++F+++g  s+f   v +f+ 
  OGLUM03G27220.1 388 TVPARFANNFNGH--ISEEVNLRSPSGETWSIGV--ANSDAGeLVLQPGWKEFVDGNGIEEGDCLLFRYSGVsSSF--DVLIFDP 466
                      6899***888666..6779***************..5555445***************************987887..8888875 PP
4B336.58.4e-12605685585
                      -..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        +s+v +s  +++ ++ +fa ++ g ++ +  +++le  ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+
  OGLUM03G27220.1 605 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLERaSRGGEWHVLFVHRQNTRGFY-GAGWRQFAGDNRLVAHDICLFELT 685
                      4445554445599999********76563.3..6999998999*******9999999986.77*******************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MGMLKIGENC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEQASP HFVENRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPS  180
AYHREEKKEG DDEDEDEDED EDEDEDEDKD GEDRYYFCRH GGRVTEYNLS KGDKEEISRV  240
PVPVEPGNPV LVKVIHASHL LSSRYSTVGV SPEFAGRYLG PAMAREVVME RGGGGGGGDQ  300
WHVRFVRRES SRGFHGTGWR RFARDNGLLA HDVCLFELRL VDGAGAGDRL RRRPRPTMAV  360
HVLRRARTAA FARSGKNTAT GAIWPTTTVP ARFANNFNGH ISEEVNLRSP SGETWSIGVA  420
NSDAGELVLQ PGWKEFVDGN GIEEGDCLLF RYSGVSSSFD VLIFDPSGCE KASPHFVGSH  480
GFGRAENSAG AEQGGRNGRR TPPIVDGDNG HRHHLEMTLH RNSCRSIPRA CKRSLFSDET  540
EAKENDGEDE DEDVVAAAEG GRYGEYYFSR HGRVAEYNLR EEDREEISRV PVPVLPGNPV  600
FVQVIHSSHV RSSKYCIVGV SPEFAGKYLG AVEREVVLER ASRGGEWHVL FVHRQNTRGF  660
YGAGWRQFAG DNRLVAHDIC LFELTMVDAA AGGGGNRRRR WSRRPTMTVH VLRRVRGRFV  720
LLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348353DRLRRR
2349355RLRRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-28B3 family protein