PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27140.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1194aa    MW: 135795 Da    PI: 9.0971
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-16126207997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ l +++g ++ vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  OGLUM03G27140.1 126 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 207
                      333.456********888877..899****************..*********************************99999..66655 PP
2B3612e-19339438198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  OGLUM03G27140.1 339 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEF 430
                      6677888888887788***********6..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  OGLUM03G27140.1 431 GATVHLLR 438
                      66777666 PP
3B357.91.8e-18514606899
                      -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
               B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l+++ s+ +++v+++
  OGLUM03G27140.1 514 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFELMNDeSKLTMTVHII 604
                      555555112346689***999.3444455566777899*******..77777779**************************998********** PP

                      -S CS
               B3  98 rk 99 
                      r+
  OGLUM03G27140.1 605 RR 606
                      98 PP
4B355.21.3e-17679763598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F ++++s+f   v +++
  OGLUM03G27140.1 679 M--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFCHIENSRF--AVLILD 763
                      4..5556655.***********999..888****************..********************************999999..777766 PP
5B344.52.7e-14881979399
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+  + ++f+ 
  OGLUM03G27140.1 881 TTMKHSNVNSHyASLVIAKHYACAYF--PRTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDVCIFHLKnFNgRKFRA 972
                      78889999998889********8887..557789999985778*******77888888*************************98666688888 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++r+
  OGLUM03G27140.1 973 TVHLLRE 979
                      8888875 PP
6B355.21.3e-1710971190899
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
               B3    8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93  
                       s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++
  OGLUM03G27140.1 1097 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMT 1184
                       55555522345899*****993.33344.5555554999*******..777776689***********************996644555677 PP

                       EEEE-S CS
               B3   94 vkvfrk 99  
                       v+++r+
  OGLUM03G27140.1 1185 VHIIRH 1190
                       777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1194 aa     Download sequence    
MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL  60
NELARPRGRG FSLICITISS WNFCSVCKVH MYGWTRFQKK KSCDWSKRYV DHLNGKMKCF  120
HLQMSANFGH SMTIPNKFLD HFGGTLSRTI ELVSPKGIVY IVKVTEHMNK TILQCGWEAF  180
VDAHHIEEND SLLFRHIENS RFEVLILDSD GCEKVFTCAG IKKTSSVQER NAAPVDISRS  240
THDETTQSSG SKKFVRCQRA SDSQRGKTAK LAETSSSGES GEEGTDSSTS EDESSYELDD  300
PQMPPGRNYV LSRWTSLSEA QEEKVDMLVQ DIQPEIPVFV AIMKHSNVNS RRACLVIPKR  360
YASAHFPLES QTITLQRQGK NKKWYPMFYI RKDGSGYMLY GCWKNFVRDN HVKEGDMCIF  420
HLTKFTGGEF GATVHLLRET KSGSLGSFHT SHKRFDLRDG RTWPKVTGAR RVSSRPYLTA  480
DRVSLTEEQV RKVEEVVHSI QSEGPMYVSI MNKSNVGTDG LYIIIFGRQF ATRYLPEGEQ  540
TLTLLMTGKS NAWQVKMRPR SGDAQMITTG WRHFVHDNHL QIEDICLFEL MNDESKLTMT  600
VHIIRRNEKS YPGASLGLGK LGTHQASSST SGPEKRNCCS GKSPFKTTIP NPEMKKYCDC  660
CKRYVDHSNG KMKCFHRQMS ANFEHSMIIP NKFLDQFGGK ISRTVELESP KGNVYVVKVS  720
KHMNKTVLQC GWEAFVDAHQ IEENDSLLFC HIENSRFAVL ILDSDGCEKV FSCSGKRRAS  780
GVQERNADPI DVSSSTHNDT AQSSGGERFA RSESGSDSQH REEAKESSSS EHESSYDLVD  840
PQIAPMPGYV LSRGTNLSEA HEEKLDMLVH EIRPEIPLYV TTMKHSNVNS HYASLVIAKH  900
YACAYFPRTS QTITLKWHGK NRKWHPKFYI RKDQVGYILH GRWIDFVRHN HVKEGDVCIF  960
HLKNFNGRKF RATVHLLRET IPHSFGELHI PKRFESRNGR MRLKMTDDRR VSSTECRRGT  1020
MEPSTTNVKK EADNEQCNNG QGKRQEPLNF DVSVGSSKPY LTADRVSLTE EQFRKVEENV  1080
HSIQSEGPIY VSIMNKSNVG TDGLYIITLG RQFATRYLPE GEQTLTLLTT GTGKAWQVKM  1140
RPRSGDARMF TLGWRDFVRD NRLQTEDICL FQLMKNSERG LAMTVHIIRH SERS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein