PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27130.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 762aa    MW: 85777.1 Da    PI: 9.304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27130.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-14371161297
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + + +++p +f++++ggk   + t++le+++g  + v++  + + ++++l+ GW+ Fv+a+++keg++++F+++++s+    v ++
  OGLUM03G27130.1  37 SMHSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 116
                      456799******888888..5669***************..*******************************9986655..66665 PP
2B340.83.8e-132463281698
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      lv++ ++a+ h   ++e+ t+tl+ +s  ++W  ++  r  ++ ++l++ W++Fv++n L+e D+++F  ++  ++f ++v++++
  OGLUM03G27130.1 246 LVISSRYASVHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFAFTVHLLQ 328
                      799999999997..456779*****66659******66777777*************************8766589988888876 PP
3B344.82.3e-144445211694
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      l l+ ++a+++   +k +++tl+l + +g  W+++l +     k++r +lt+GW++F+++n+L++gDf++F+l+++++   ++
  OGLUM03G27130.1 444 LELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVrrrYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKL--TM 521
                      6788899999952.33.3346665.569*******97754433334478***********************9875554..44 PP
4B343.27.2e-146737561496
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                      ++l l  ++a++  ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L++gD+++++l+++ s+ +++v+ 
  OGLUM03G27130.1 673 CQLELGARYAAAVHLPDRR--QAVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLCVGDICLLELKKHeSKLTMTVHT 756
                      7777888888888777555..5899999*********..555555224445557**********************877888888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD  120
CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS  180
PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ  240
SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD  300
NCLQEEDICL FVPTKGGRNF AFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI  360
EEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS  420
EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR  480
RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEIIPDRFVN HFGGKIPGTI  540
KLESPNDPVD TSGRSSDDTA QPSRSERFAR CQRDTSNDRR NTASLTAVSS SSEESENVSL  600
KSNRNGVSDE SQESEDSEGP AGPPYILSWK SKSRLSSLQK KIIKEKVRSI QSEVPIYVAI  660
MNKSNIGLTS SPCQLELGAR YAAAVHLPDR RQAVVLQRMG QRWDTVMQTK SGRCTTRRFL  720
INGWSRFVRD NRLCVGDICL LELKKHESKL TMTVHTIFSQ QS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1513519LKKKKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-12B3 family protein