PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27070.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 361aa    MW: 37802.5 Da    PI: 7.0542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27070.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.97.4e-142116111127
              NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyat..gkrknra...........tksgy 82 
                      ++ l++++L++k+++++++l  +i+++d+y++ P dL +         + ++    +yfF++ ++       +r++ra            + g 
  OGLUM03G27070.2  21 EQKLITKFLRPKIADDTIKL-PFIHDADVYSAAPPDLAArhvpargtdRGDGAGAVYYFFCPVHRGGGGvgARRRQRAvgggggsngeaGHCGC 113
                      789****************9.88**************84456665433222233366999999998764213455555899999888776689* PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      W+  g +k+vl+++g+ vg  + L +    +g+ ++ ++  W+m e+ 
  OGLUM03G27070.2 114 WHPEGGKKAVLDAGGRRVGHLRRLSYGvreRGSGRRLTRLGWCMTEFG 161
                      **************************97767788888899******96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MSMNPVAIPI DEGPSGHEQH EQKLITKFLR PKIADDTIKL PFIHDADVYS AAPPDLAARH  60
VPARGTDRGD GAGAVYYFFC PVHRGGGGVG ARRRQRAVGG GGGSNGEAGH CGCWHPEGGK  120
KAVLDAGGRR VGHLRRLSYG VRERGSGRRL TRLGWCMTEF GVDHGGGGGG EADAGGLVLC  180
KMYRSPRAAQ VEARLQAAAA STSGSKRKQA ADDLIHAPAS SRHRHADVMP AGVDGDEVGS  240
IHPSVQFPPP PEEQTLVQTR DGPRTDHEVI MALAMGATVD ELLGPKHGEP GESSPFPAPA  300
AEPCSISGGG DIFWTASGVV PCPDMAMAFP APPAGEFSWD KELAWIRELL SGSRPSSCSA  360
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