PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G25420.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 478aa    MW: 51255.4 Da    PI: 3.8742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G25420.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.54.2e-2671481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      lppG+rF+P+d+elv++yL +++++k+l+l+ vi ++d ++v Pw+L +  +++ +e +fF+ ++ k+ +gkr++r +   g+W+ +    d e
  OGLUM03G25420.1   7 LPPGLRFDPSDDELVSRYLLRRIQQKPLPLDGVIVDADPLSVPPWTLLAD-HTRGDEAFFFAGARAKNGKGKRQKRtVEGGGFWQGQRMavDGE 99 
                      79****************************999**************743.456789*******************555599**9665522222 PP

              NAM  92 vlsk........kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                                  +  +          ++ k +L f+  + ++g ++ Wvmhey++
  OGLUM03G25420.1 100 R--LvvpgdgggG--VdgsggggleiTWRKYVLSFFA-EGEQG-SSGWVMHEYAV 148
                      2..1234566550..15555666666999999****3.44443.89*******86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MAGADGLPPG LRFDPSDDEL VSRYLLRRIQ QKPLPLDGVI VDADPLSVPP WTLLADHTRG  60
DEAFFFAGAR AKNGKGKRQK RTVEGGGFWQ GQRMAVDGER LVVPGDGGGG VDGSGGGGLE  120
ITWRKYVLSF FAEGEQGSSG WVMHEYAVTS SADLASSPLR LYRVQKRKRE PQCLDSHDDE  180
DGGDQERAAP RRGVALPAAD GTDQGSYGVI DGEPSLVSHC LPDQIVPPAE EADATAGAVD  240
EERWSPPQPA SPTAALVKQN SYDLMAISSL LFSDLPDRID DDDLSVSQTE GTELSEQGSS  300
GVIDDDYWWV FHGLSDLIAL PAEEADATGG AEREEIALLD EERCPQPQPA PPTDALVPPL  360
QGQNSYDVMA DSSLLFADLP GRIDDDELQR SLRVSDMPDL FLSQTEEAGA GGGGGAAPVL  420
NKQSNSSPLG VMDSEVPIVL SDLEFPESID EMLSYIDFAT DDCLDFDMDE LFSDMPAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.26e-14NAC family protein