PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G25260.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 370aa    MW: 36494.6 Da    PI: 8.5769
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G25260.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-3941101262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  OGLUM03G25260.1  41 QEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 101
                      57889*****************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MAPAAGDDAV VPRKGAGGGG TTTPPPPPPA QQQPLPPPPP QEQGLRCPRC DSPNTKFCYY  60
NNYSLSQPRH FCKTCRRYWT KGGALRNVPV GGGCRKNKRS RSAAAASRLS LNLPTVEGIG  120
GAAADPAAAA AARLGFLGGG TTMMVSSSTS PLGGAAAAVA DFQQGGAVGM LPLPRLQSPA  180
GGGVGHHQYV PFGEWPSGDI AGGNAVNGGG GHGAVSSTIA SSIESLSFIN QDLHWKLQQQ  240
RLATMFLGPP GSASAAAAAQ ANDGGGNGAQ ATASGHAAGG GGGAFMHMAG SVPSMEAAMP  300
SATSWFMDSC SYGLPSPPPP ATAAVAATTS SNLNSGGRSS GGGGGDDNAT SNCGSAIPAW  360
GDISTFAMLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336344GGRSSGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-29Dof family protein