PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G24530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 137aa MW: 15245.6 Da PI: 7.257 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.5 | 6.1e-12 | 2 | 31 | 13 | 42 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42 f kR++ ++KKA+ELS+L +++++v+++++ OGLUM03G24530.1 2 FKKRQKSLMKKASELSTLYGVDACVVMYAE 31 89**************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence |
MFKKRQKSLM KKASELSTLY GVDACVVMYA EGEAQPMMKD QYENTTNLEG FLKQRIANLQ 60 EKVDKAKHEN DELETKLLLL NSLDGCLPSL VGLTVKQITS LNSMVEERLK KLRGNGLLAT 120 PVPTSNQDVA SATNIQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65330.1 | 4e-07 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G24530.1 |