PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G21800.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 512aa    MW: 53101.3 Da    PI: 6.5179
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G21800.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.52.3e-581345092374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                      ++lL  cA av++g+l+++q+l   l el s +gd+++Rlaa+ ++ALa+ l    ++ +   p+ +++   + + + a  + f+evsP++ + 
  OGLUM03G21800.1 134 EQLLNPCAVAVEAGNLSRVQHLFYVLGELESFSGDANHRLAAHGLRALARWLPAALTTSSXPTPAVAAA---EPRLFRASLIrFHEVSPWFALP 224
                      689*************************************************99444444333333333...33333333336*********** PP

             GRAS  95 hltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg........skeeleetgerLakfAeel 172
                      + +aN aI +a          + +H++D+++s+G+QWp+Ll++L+ +p  + pps+R+T+vg+ ++          +         L ++A+++
  OGLUM03G21800.1 225 NALANAAIAQASTCGaagatpRPLHVVDLGVSHGVQWPTLLESLTRQPggRAPPSVRLTVVGPGATAtspaapfsASPPGYDFSPHLLRYAKSI 318
                      **********96533345567889************************656699********98777889999987888899999********* PP

             GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerfleal 261
                      +++++++   a +l+d        + gEal+V+l+++l +        ++er+evL+  ++l+P++vv++e +     +  +++s + +f+  l
  OGLUM03G21800.1 319 NLDLRISR--AATLDDA----VPGDDGEALVVCLQFRLGHAA------AEERREVLRKARGLNPELVVLSELDsgvgvVGGDGGSAAGEFAARL 400
                      *******8..5667766....66789**********999997......445899******************94443333356699******** PP

             GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                      e  + +++s++a +    + + + Er+ll+ e+  ++a++  +  + +e  e Wrer+ +aGF+++p++ +a+++a++llrk++ +++++  + 
  OGLUM03G21800.1 401 ELLWRFLESTSAAF----KGKDVEERRLLEAEAGAILAAADVA--AAREGREGWRERMAAAGFEEAPFGAEAVESARSLLRKYDsGWEMSAPSP 488
                      **********9997....7777888889999999999999887..7778899********************************6555666666 PP

             GRAS 355 sgslv.lgWkdrpLvsvSaWr 374
                       +++v l Wk++p+ ++S Wr
  OGLUM03G21800.1 489 AAAAVaLRWKGQPVSFCSLWR 509
                      666667**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MSYHEQERHG GNGLDWFEES MSSLLAADVD LAGGGGDAGG GGYAWWWAAS PAAQQDDIGS  60
VVAQTLSPPS MAAPAAASPS IASPAASSPS DVPSSSSKKR KSPAHRAPGH TGGKKGGGGK  120
GGGGGSDRDM RWAEQLLNPC AVAVEAGNLS RVQHLFYVLG ELESFSGDAN HRLAAHGLRA  180
LARWLPAALT TSSXPTPAVA AAEPRLFRAS LIRFHEVSPW FALPNALANA AIAQASTCGA  240
AGATPRPLHV VDLGVSHGVQ WPTLLESLTR QPGGRAPPSV RLTVVGPGAT ATSPAAPFSA  300
SPPGYDFSPH LLRYAKSINL DLRISRAATL DDAVPGDDGE ALVVCLQFRL GHAAAEERRE  360
VLRKARGLNP ELVVLSELDS GVGVVGGDGG SAAGEFAARL ELLWRFLEST SAAFKGKDVE  420
ERRLLEAEAG AILAAADVAA AREGREGWRE RMAAAGFEEA PFGAEAVESA RSLLRKYDSG  480
WEMSAPSPAA AAVALRWKGQ PVSFCSLWRP AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112119GGKKGGGG
2116123GGKKGGGG
3117124GGKKGGGG
4118125GGKKGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-45GRAS family protein