PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G19910.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 307aa    MW: 32499.7 Da    PI: 7.0411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G19910.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l+ +v+++G+g+W++++ + g+ R+ k+c++rw +yl
  OGLUM03G19910.1 14 KGPWTPEEDMVLASYVQEHGPGNWRAVPPRTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding43.76.5e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++  E+ l++++ ++lG++ W++Ia++++ +Rt++++k++w+++l
  OGLUM03G19910.1  67 RGGFSHHEERLILHLQALLGNR-WAAIASYLP-HRTDNDVKNFWNTHL 112
                      7889******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MGRPPCCEKE GVKKGPWTPE EDMVLASYVQ EHGPGNWRAV PPRTGLLRCS KSCRLRWTNY  60
LRPGIRRGGF SHHEERLILH LQALLGNRWA AIASYLPHRT DNDVKNFWNT HLKKKLALTS  120
SSSSPPTPTT PLVARGQWER KLQTDIDLAR RALRDALSVD DAASPAMISS GPPAPAAAAA  180
YALSERNISV MLSGWAAPPP ARKGLSACNP AAATTTPGGA AAESASTAGT SSELTADCCS  240
GGGDSSASNC LPSSMLLACD DCDATATAAG VAPLSAIESW LLLDDSGEPQ LALDEQLLDV  300
ALRNYAF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-83MYB family protein