PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G19040.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 567aa MW: 62660.8 Da PI: 7.8433

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G19040.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.8	4.6e-35	271	363	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ll+ OGLUM03G19040.1 271 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLS 355 9**************************************************************999.........************* PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+ks+ OGLUM03G19040.1 356 EIHRRKSS 363 ***987 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MDSLHLVHVK LLAADLLSLA SRHTSPPSFA RCGRTVTRAE IVGVVVSRDR REKFLRFLVD 60 DGTGCVPCVL WLNHHYLNAA SSSSRASDSD PTAEMALRMS EVVSLGTLLR VRGRIVLYRG 120 AIQIAVRDVV LEKDPNVEDQ AELGEEKIWA TALSASKAQI EAAKINLEKG MGNPLDQTKE 180 ARKLDQRTVQ DCMMGSTYET SKSSAQKHSC LYPKATHGPW QHERVAGEHA HARSMAFLVE 240 RCGGEMVVSM ERSHGRSTTT AAAVTAAPAP FLSKTYQLVD DPSTDDVVSW GEDEATFVVW 300 RPPEFARDLL PNYFKHNNFS SFVRQLNTYG FRKIVADRWE FANEFFRKGA KHLLSEIHRR 360 KSSSCSQPQP PPPFPMHQHY PLSLFSPPTT TRSPPVGAAA AAAYHFQEEY CSSPADYAGG 420 GGDLLAALSE DNRQLRRRNS LLLSELAHMR KLYNDIIYFL QNHVEPVAPP PLAAATSCRL 480 VELGPSTTER RRSAASPSGD NDDDAAVRLF GVRLDDDHGK KRRVQLVQED EGDEQGSEGS 540 GVSIQMRMKA PLNTKSLLSG ARTVPYG

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MDSLHLVHVK LLAADLLSLA SRHTSPPSFA RCGRTVTRAE IVGVVVSRDR REKFLRFLVD  60
DGTGCVPCVL WLNHHYLNAA SSSSRASDSD PTAEMALRMS EVVSLGTLLR VRGRIVLYRG  120
AIQIAVRDVV LEKDPNVEDQ AELGEEKIWA TALSASKAQI EAAKINLEKG MGNPLDQTKE  180
ARKLDQRTVQ DCMMGSTYET SKSSAQKHSC LYPKATHGPW QHERVAGEHA HARSMAFLVE  240
RCGGEMVVSM ERSHGRSTTT AAAVTAAPAP FLSKTYQLVD DPSTDDVVSW GEDEATFVVW  300
RPPEFARDLL PNYFKHNNFS SFVRQLNTYG FRKIVADRWE FANEFFRKGA KHLLSEIHRR  360
KSSSCSQPQP PPPFPMHQHY PLSLFSPPTT TRSPPVGAAA AAAYHFQEEY CSSPADYAGG  420
GGDLLAALSE DNRQLRRRNS LLLSELAHMR KLYNDIIYFL QNHVEPVAPP PLAAATSCRL  480
VELGPSTTER RRSAASPSGD NDDDAAVRLF GVRLDDDHGK KRRVQLVQED EGDEQGSEGS  540
GVSIQMRMKA PLNTKSLLSG ARTVPYG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	3e-64	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G19040.1