PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G16100.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 395aa MW: 42316.7 Da PI: 8.814

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G16100.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.3e-53	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL+++++++++++ ++i++vdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s OGLUM03G16100.1 9 LPPGFRFHPTDEELIVHYLRNRAASSPCPV-SIIADVDIYKFDPWDLPSKANYGDREWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHS 101 79**************************.89***********999999************************************ PP NAM 95 k.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e vg+kk Lvfykgr pkg+kt+W+mheyrl OGLUM03G16100.1 102 SgggggaaTNESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 142 988887777777*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKANY 60 GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGGGGAAT NESVGVKKAL 120 VFYKGRPPKG TKTNWIMHEY RLAAADAHAA NTYRPMKFRN TSMRLDDWVL CRIYKKSSHA 180 SPLAVPPLSD HEQDEPCALE ENAPLYAPSS SSAASMILQG AAAGAFPSLH AAAAATPRTA 240 MQKIPSISDL LNEYSLSQLF DDSGAAAAAP LQEMARQPDH HHHHQQQHAL FGHPVMNHFI 300 ANNSMVQLAH LDPSSSAAAS TSAGAVVEPP AVTGKRKRSS DGGEPTIQAL PPAAAAAKKP 360 NGSCVGATFQ IGSALQGSSL GLSHQMLLHS NMGMN

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWDLPSKANY  60
GDREWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGGGGAAT NESVGVKKAL  120
VFYKGRPPKG TKTNWIMHEY RLAAADAHAA NTYRPMKFRN TSMRLDDWVL CRIYKKSSHA  180
SPLAVPPLSD HEQDEPCALE ENAPLYAPSS SSAASMILQG AAAGAFPSLH AAAAATPRTA  240
MQKIPSISDL LNEYSLSQLF DDSGAAAAAP LQEMARQPDH HHHHQQQHAL FGHPVMNHFI  300
ANNSMVQLAH LDPSSSAAAS TSAGAVVEPP AVTGKRKRSS DGGEPTIQAL PPAAAAAKKP  360
NGSCVGATFQ IGSALQGSSL GLSHQMLLHS NMGMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	3e-85	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G16100.1