PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G13820.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 217aa    MW: 24107.4 Da    PI: 10.0222
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G13820.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.78.1e-1021103284
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                      W++ e+ aLi+a   ++ + +rg l +++W++ ++++      + r  +r+  qC+ + + l+ ryk++ +          s +++f++
  OGLUM03G13820.1  21 WSDGETAALIDAWGPLHVARSRGPLPAKDWRAAASAVnarraaAGRRHNRTRAQCRARVQTLKERYKRELAKPPP------SGWRHFSR 103
                      ***************************************999888889*******************98665553......24555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MSSSKPSPQQ QQQQQRANEW WSDGETAALI DAWGPLHVAR SRGPLPAKDW RAAASAVNAR  60
RAAAGRRHNR TRAQCRARVQ TLKERYKREL AKPPPSGWRH FSRLQEFLLA GPPPGFPPKT  120
MPPASVKKEE EEEEECQDEA VGGGGGSGGL LGRWVVPTRP RNGAAAWCPV GVVVTKLAEV  180
YERVELARLE VEKEKVAMEM EKAMQEAVKL KEEKLDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.29e-08Trihelix family protein