PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G09920.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 435aa MW: 45858.6 Da PI: 9.9899

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G09920.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	7.3e-07	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H OGLUM03G09920.1 79 YVCEICGQGFQREQNLQMHRRRH 101 9*********************9 PP
2	zf-C2H2	10.7	0.0016	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ OGLUM03G09920.1 175 WVCARCAKGYAVQSDYKAHLKTC 197 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD 60 PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR PAAATAAEDG 120 GAAGGGGGAG GGGARKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG GRRQWVCARC 180 AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRVRG EVVPVATTLP 240 VIRPAALRHH HHHPPPPPPE LQLLPASTTA PLAAAFSSNS TTTGSSSHEQ HATTMTTTKL 300 QLSIGPAAVV AAASGGGGAC AAAAGGEEEE QQREEVRRAL EEKIAADAAR ERAREEAAAA 360 ERALEDARRA RHRARGELEK ALALRDHAAR LIAQVTCHAC RQRSLAVMSM AAIDGHGASA 420 VAREHLRGGG VGAGI

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD  60
PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR PAAATAAEDG  120
GAAGGGGGAG GGGARKRVFV CPEPSCLHHD PAHALGDLVG IKKHFRRKHG GRRQWVCARC  180
AKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ DACNSGRVRG EVVPVATTLP  240
VIRPAALRHH HHHPPPPPPE LQLLPASTTA PLAAAFSSNS TTTGSSSHEQ HATTMTTTKL  300
QLSIGPAAVV AAASGGGGAC AAAAGGEEEE QQREEVRRAL EEKIAADAAR ERAREEAAAA  360
ERALEDARRA RHRARGELEK ALALRDHAAR LIAQVTCHAC RQRSLAVMSM AAIDGHGASA  420
VAREHLRGGG VGAGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	55	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	3e-88	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G09920.1