PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G09410.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 329aa MW: 35882.3 Da PI: 5.2641

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G09410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.3e-11	145	192	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + kK +K++ L +++Y+k+L+ OGLUM03G09410.1 145 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 192 5799**********************.....9***************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MDEQNQWLTE PEPEELTYMY HQEEHARMQE QFAGTPLVEQ PVRFDQFYPA SMAPNQFHAS 60 HCSSFPAFGG SSALPSLAFG AVATTKKEQV QQPSPSSSNV LSFAGQVQGS TTTLDFSGRG 120 WQQDDGVGVF QQPPERRSRP PANAQEHVIA ERKRREKLQQ QFVALATIVP GLKKTDKISL 180 LGSTIDYVKQ LEEKVKALEE GSRRTAEPTT AFESKCRITV DDDDGGSASS GTDDGSSSSS 240 SPTVEASIHG STVLLKICCK ERRGLLVMIL SELEKQGLSI INTSVVPFTD SCLNITITAK 300 ARLALPIEEG FSTAVELVKN LTVAVRGFK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	156	ERKRRE
2	152	157	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-31	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G09410.1