PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G09110.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 404aa    MW: 45034.3 Da    PI: 5.0466
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G09110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.7e-32491402103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw e g sfv++d++ f++  L+++Fkhsnf+SF+RQLn+YgF+kv+ ++         we++++ F  g+k+ll+
  OGLUM03G09110.1  49 FLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFER-DLHRHFKHSNFTSFIRQLNTYGFRKVHPDR---------WEWANEGFIMGQKHLLK 132
                      9************************************.8**************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +ikr+k++
  OGLUM03G09110.1 133 TIKRRKKS 140
                      *****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MGSKKRSPQH PAAAAPPPAV GGGGEVSGDG GASTANGPVV PKPSEVAPFL TKVYDMVSDP  60
ATDNVISWAE GGGSFVIWDS HAFERDLHRH FKHSNFTSFI RQLNTYGFRK VHPDRWEWAN  120
EGFIMGQKHL LKTIKRRKKS SQEAPSEIQK APVKTAPGTE NIEIGKYGGL EKEVETLKRD  180
KALLMQQLVD LRHYQQTSNL EVQNLIERLQ VMEQNQQQMM ALLAIVVQNP SFLNQLVQQQ  240
QQQRRSNWWS PDGSKKRRFH ALEQGPVTDQ ETSGRGAHIV EYLPPVPETS GQVNPVEGAI  300
CSANSQPVPS PAVATPMDMQ TSNVADTLGS SEEPFTDNST LHEWDDNDMQ LLFDDNLDPI  360
LPPFENDGQM GPPLSVQDYD FPQLEQDCLM EAQYNSNNPQ YVLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137LKTIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.23e-72HSF family protein