PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G08460.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 194aa MW: 21663.9 Da PI: 8.7234

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G08460.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	57.6	5.4e-18	1	46	1	46
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46 +d++s se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l OGLUM03G08460.1 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLS 46 578999************************************9984 PP
2	YABBY	93.3	5.8e-29	81	145	98	162
YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 +s ++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa OGLUM03G08460.1 81 LPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 145 445577889999***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MDLVSPSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSFLSP RPPMVQPLSP 60 TDHPLGPFQG PCTDCRRNQP LPLVSPTSNE GSPRAPFVVK PPEKKHRLPS AYNRFMREEI 120 QRIKAAKPDI PHREAFSMAA KNWAKCDPRC SSTVSTSNSN PEPRVVAAPI PHQERANEQV 180 VESFDIFKQM ERSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	2e-54	YABBY family protein

Link Out ? help Back to Top
Ensembl	OGLUM03G08460.1