PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G08230.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 556aa    MW: 62179.7 Da    PI: 8.2954
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G08230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-183083941199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  OGLUM03G08230.1 308 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 394
                      455669**********999999999***************77999999**************************998888..9999986 PP
2B346.28.2e-154575291487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++  +e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL +gD++ F++ ++
  OGLUM03G08230.1 457 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 529
                      55889********988554..4555.5599*******9876667777*************************6654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP  60
QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN KISVLPEELG SLSNLQQLSI  120
SQNSLSRLPK SVGDLRNMLL LNVSDNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN  180
LVCLKSLSLN GNKIRQLPQN LLKDCKALQN ISLHDNPISM DQFQQMDGFT EFEARRRKKF  240
DKQIDSNVMM SSTALDEGID LNYQKTNSLA HSACCPDLLQ ILAQRMEDQM ANVRLTDFEF  300
FRIILPGSSK TKLKLPYKFA RELGDRELRE ARLRVAGEGR RPWDVKVFDD DVSGDVYLGR  360
GWQEFARAHD LRDGHFLVFR YDGAAAFTVT VFDETMCRRD YRRHHDAAGT GSSSSSDSSD  420
AAAAAAATAA AEGVGDVALS QFAVTLRQCN LEDKQAQYLN VPMEFQEAHE YARREKVVLR  480
MRGEAWTVRL KHSRRERGQR TAFRYGWHRF CVDNGLAVGD TCFFRVLREG DLRRRGAADD  540
HVLKVAVRKA DGTTLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-19B3 family protein