PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G07230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 26664 Da PI: 6.9419 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.3e-19 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k OGLUM03G07230.1 69 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 122 56689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 113.6 | 1.3e-36 | 69 | 159 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+e+l+ OGLUM03G07230.1 69 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLA 159 9**************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MSREEDEKLL FPSFAFPAEC FPEAATSGGE QKKARQRRRR KVKPEAAAAA AAAAAAALAG 60 ESGGDEQAKK RRLSDEQARF LEMSFKKERK LETPRKVQLA AELGLDAKQV AVWFQNRRAR 120 HKSKLMEEEF AKLRSAHDAV VLQNCHLETE LLKLKERLAD VEEEKAKLAA VAAATTGGGG 180 GGGGGSSSPS SSSFSTVTYH PALAGQFGVE AVAEEADLTY MSEYAYNSYM LELAAAGYCG 240 GVYDQFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 90 | KKRRLSDEQARFLEMSFKKERK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-29 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM03G07230.1 |